Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01050 ATGTTCGCCGTAGATTTTTTTTCAGATGACTGGAGATTGTCCTCCGATGCGGGGAAGTGCCGGGCGAAGCCGAAGGATCTTGTTCTTGGGAATATGTCGCGTCAGATATGGTGCAAGCCGAACGAGTACATCTATGCCATCGTGATCAGCTTTCTCGGGCGCAAAGGATTGCTAGAGAACTGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTGATACGTAGCATGTTTTCTTATACCGCTTTGATAAATGCCTACGGGTGCAATGGTCAAGGTGATTTAGATTGCGAGGGACTGTTGGGACTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTGATGCAAGCAGCAGGATGCGTGCCAAATTCGTCAACTTACAGCATTCTGTTGAATCTATATGGGAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCTGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTATTTGGAGAGGGTGGATACTTCAAGGAGGGAGGGTTGCATGAGGATGCCAAGAAAATTTTACTTCGCATGAATGAGAAAGGAATAGTTCCAAGTTCTAATGCGTATAGTGGACTGTTTGAAGCTTATGGACGTGCTGCATTGTATGATGAAGCTCTTGTTGCATTTAACACAATGAACGAAGTGGGAAATAAGTCAACTGTTGATACCTACAATTCGCTAATTCACTCATTTGCTAGAGGTGGACTGTACATGGAGTTTGAAGCAATCTTGTTGAGAATGAGAGAATCCGGCAATTCAAGGAATGTGAATTCATTTAGTGGTATTGTTGAAGGTTATAGGCAAAGTGGTAAGTTTGAAGAAGCTATAAAGTCCTTTGTTGAGATGGAAAAGCTGAGATGTGAACCCATTGAGAAGGCCCTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTTGATGAGAGCAAGGAGCAGTTTCATGAGATTAAAGCTTCAGGAATATTACCTAGTGTATTATGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGACCGGTGGGATGATGCCTGTGAATTACTTGATGAGACGATTACAAACAGGGTATCCAGTGTTCATCAAGTCATTGGCCAGATGATCAAGGGAGACTACGATAATGGTTGA 1176 43.62 MFAVDFFSDDWRLSSDAGKCRAKPKDLVLGNMSRQIWCKPNEYIYAIVISFLGRKGLLENCSEIFDEMASQGVIRSMFSYTALINAYGCNGQGDLDCEGLLGLFAEMRHEGVQPDLMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEGGLHEDAKKILLRMNEKGIVPSSNAYSGLFEAYGRAALYDEALVAFNTMNEVGNKSTVDTYNSLIHSFARGGLYMEFEAILLRMRESGNSRNVNSFSGIVEGYRQSGKFEEAIKSFVEMEKLRCEPIEKALEAVLGVYCFAGLVDESKEQFHEIKASGILPSVLCYCMMLAVYAKNDRWDDACELLDETITNRVSSVHQVIGQMIKGDYDNG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9183071 9188935 + Cp4.1LG09g10520.1 Cpe09g01050 475416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 31 115 - -
Cpe09g01050 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Cpe09g01050 391 Pfam PPR repeat 274 303 IPR002885 -
Cpe09g01050 391 Pfam PPR repeat 344 368 IPR002885 -
Cpe09g01050 391 Pfam PPR repeat 313 338 IPR002885 -
Cpe09g01050 391 Pfam Pentatricopeptide repeat domain 189 247 IPR002885 -
Cpe09g01050 391 Pfam Pentatricopeptide repeat domain 64 116 IPR002885 -
Cpe09g01050 391 Gene3D Tetratricopeptide repeat domain 26 117 IPR011990 GO:0005515
Cpe09g01050 391 Gene3D Tetratricopeptide repeat domain 118 212 IPR011990 GO:0005515
Cpe09g01050 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 114 IPR002885 -
Cpe09g01050 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 31 115 - -
Cpe09g01050 391 Pfam PPR repeat family 124 170 IPR002885 -
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 117 179 - -
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 180 390 - -
Cpe09g01050 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Cpe09g01050 391 Gene3D Tetratricopeptide repeat domain 218 390 IPR011990 GO:0005515
Cpe09g01050 391 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Cpe09g01050 391 TIGRFAM PPR: pentatricopeptide repeat domain 344 369 IPR002885 -
Cpe09g01050 391 TIGRFAM PPR: pentatricopeptide repeat domain 43 73 IPR002885 -
Cpe09g01050 391 TIGRFAM PPR: pentatricopeptide repeat domain 239 271 IPR002885 -
Cpe09g01050 391 TIGRFAM PPR: pentatricopeptide repeat domain 128 161 IPR002885 -
Cpe09g01050 391 TIGRFAM PPR: pentatricopeptide repeat domain 274 305 IPR002885 -
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 117 179 - -
Cpe09g01050 391 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 180 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01050 - - - mcha:111008838 504.982
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01469 Cpe09g01050 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01050 Cpe-Chr9:9183071 Cpe15g00451 Cpe-Chr15:5608901 2.85E-07 dispersed
Cpe20g00216 Cpe-Chr20:1232696 Cpe09g01050 Cpe-Chr9:9183071 3.47E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020088 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01050 Cpe_Chr09 FPKM 10.261236 11.316476 12.888824 11.934649 7.030097 11.348651 7.902301 9.45781 7.635718 7.192389