Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01065 ATGGCGGTTCGGAGGGTCTACGGCGGCGGCGACGACGGTGGTAGTATAAGTGGTGTTTCTTCCAACCATACTGTTTTTCTTCAGAATCGTAAAGGGTCCTCTGTTTCTGAGCCTCTTAATGCTCTGTTCGTTTCTGGGTCGTCTTCTTCGACTTCCCCCTCTATGCTTGGTTCAAAATCCACGATAAGTTTCAAAGATATCCATGGACGAAACGGATCAACTAGACCGTTCTTTTACTCATTCGATACCGAAGATAACGGAAACGAAGACTTAGATGATTACTTCCATCACCCTGAAAAGAAGAGGCGTTTAACTTCCGATCAAGTCCGATTCCTCGAGAAAAGTTTCGAGATCGATAACAAGCTCGAACTAGAAAGGAAAGTTCAATTAGCAAAGGATCTTGAGCTGAAGCCTCGTCAAGTTGCTATATGGTTTCAGAATCGTCGAGCTCGGTGGAAAACAAAGCAGCTCGAGAAGAACTACGAGGCTCTTCAATCCAGCTATGGAAGCCTCAAGGTTGAGTATGAGAAGCTACTCAAGGAGAAGGATTCACTAAAAGCTAAGATTCTTGTCCTAACAGACAAGCTGCTACTCAAAGCAAAAGAAAAGGGTAGCTCTGTGGTGTCTGAAGTAGACAAATCAAGTGACATATTTAATACAGATAGCCCACTCGTAGAGCCTCGAGATTCTTCGTATATTTTCGATCCCGATCAGTCCGACTTATCACAAGACGAAGACGATAACATGGGAAAGAATCTATTGCCTACTTACGTCTTCCCGAAGCTTGAAGATGTCGATTGCTCGGACCCGCCTGCAAGTGCTTGTAGTTTTGTGTTCCCCATTGATGAAGACAGTGCTCTTTGGTCCTGGTCTTAG 876 44.63 MAVRRVYGGGDDGGSISGVSSNHTVFLQNRKGSSVSEPLNALFVSGSSSSTSPSMLGSKSTISFKDIHGRNGSTRPFFYSFDTEDNGNEDLDDYFHHPEKKRRLTSDQVRFLEKSFEIDNKLELERKVQLAKDLELKPRQVAIWFQNRRARWKTKQLEKNYEALQSSYGSLKVEYEKLLKEKDSLKAKILVLTDKLLLKAKEKGSSVVSEVDKSSDIFNTDSPLVEPRDSSYIFDPDQSDLSQDEDDNMGKNLLPTYVFPKLEDVDCSDPPASACSFVFPIDEDSALWSWS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9274308 9278156 - Cp4.1LG09g10710.1 Cpe09g01065 475431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01065 291 Coils Coil 147 195 - -
Cpe09g01065 291 SMART HOX_1 98 159 IPR001356 GO:0003677
Cpe09g01065 291 Gene3D - 95 163 - -
Cpe09g01065 291 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Cpe09g01065 291 CDD homeodomain 100 156 IPR001356 GO:0003677
Cpe09g01065 291 Pfam Homeobox associated leucine zipper 155 196 IPR003106 GO:0006355|GO:0043565
Cpe09g01065 291 PANTHER LEUCINE ZIPPER, HOMEOBOX-ASSOCIATED, HOMEODOMAIN-LIKE, DNA REPAIR PROTEIN XRCC4-RELATED 226 268 - -
Cpe09g01065 291 PANTHER LEUCINE ZIPPER, HOMEOBOX-ASSOCIATED, HOMEODOMAIN-LIKE, DNA REPAIR PROTEIN XRCC4-RELATED 1 211 - -
Cpe09g01065 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 211 IPR045224 GO:0003700
Cpe09g01065 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 226 268 IPR045224 GO:0003700
Cpe09g01065 291 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Cpe09g01065 291 SUPERFAMILY Homeodomain-like 82 157 IPR009057 -
Cpe09g01065 291 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01065 - - - cmax:111490298 515.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01065 Cpe20g00203 CCT
Cpe09g01065 Cpe20g00203 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01065 Cpe-Chr9:9274308 Cpe11g00760 Cpe-Chr11:6092402 4.82E-47 dispersed
Cpe01g02383 Cpe-Chr1:19921644 Cpe09g01065 Cpe-Chr9:9274308 6.06E-33 wgd
Cpe01g01440 Cpe-Chr1:8624048 Cpe09g01065 Cpe-Chr9:9274308 7.52E-06 wgd
Cpe13g00941 Cpe-Chr13:7932558 Cpe09g01065 Cpe-Chr9:9274308 7.47E-34 wgd
Cpe20g00203 Cpe-Chr20:1171178 Cpe09g01065 Cpe-Chr9:9274308 2.91E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50042 PF00046 Homeodomain 2.80E-16 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01065 Cpe_Chr09 FPKM 6.116007 7.263 9.942142 7.328379 4.13037 6.382755 5.41282 10.777701 9.392595 10.519455