Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01067 ATGGATAGCAACATTGTTGGGGCTAAGCTGCTGCTGCTGATATTTGCTTTTGCTATCATTATTCCATCCCTTGAGGCTGGTATTGCAGATTTTGATGAAGTATGGCAGCAAAGAGCTCAAGAAGCCAAGAAGGCTGCCTTAGAAGCCTACCAACCCCATCCTGAAGAGGTCACTGAGAATTTCAATGAGCATGTTAACGGAGACTTAGATGATGCAAATAACACAAGGAGACATTTGAGGAAATACAATGGTCCATGTTTAGCTACAAATCCAATTGATAGATGCTGGAGATGTGACAAAAACTGGTCTAAAAACCGTAAGAAGCTAGCTGATTGTGCGCTCGGGTTCGGCCGAGGAACAACAGGAGGCAAAAATGGAAGATTTTACGTCGTTCAAGATTCGAGCGATAACGACATGCTTCATCCTAAACCCGGAACTCTCCGCTATGCCGTGATCCAAGACAGACCACTTTGGATTACATTTGCACATGACATGGTGATCAGGCTAGCTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGACGTGGTGCCAATGTCCATATAGCTAATGGTGGTCAAATTACTTTGCAATTTGTGAAGAACATAATCATCCATAATTTGCATATTCATGACATCAAAGCTGGCAATGGAGGTCTTATTCGAGACTCGGTGACCCATTACGGGATTCGAACACGGAGCGATGGTGACGGGATCTCCATGTTTGGAGCTTCGAATGTTTGGATAGATCATGTTTCCATGTCTAATTGTCAAGACGGACTAATCGATGCAGTCATGGCGTCGACTGCTATTACCATTTCGAACTGCCATTTCGCTCACCATAACGATGTGATATTATTAGGGGCAAGTGATAGCCACTCGGATGACCAGATTATGCAGGTAACGCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAGAGGATGCCTAGATGCCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGCAGCCGCAACCCCACCATTATCAGCCAGGGGAACCGTTTCATTGCCCCACCGGACCCAAATTGCAAAGAGGTGACGAAAAGGGTATATGCAACAGAAAGCGAATGGAAAACATGGAATTGGAGATCAGAAGGAGATCTGCTGATGAATGGAGCTTTCTTTGTACAATCTGGGAACCCCATAAGAAAATACTCCAAGAAAGATGTGATCCATGCAAAGCCAGGAACATTCGTGACAAGGCTTACACGGTTCGCAGGGCCTCTAAAATGCATAAGGAACAAACCCTGTTAA 1314 44.6 MDSNIVGAKLLLLIFAFAIIIPSLEAGIADFDEVWQQRAQEAKKAALEAYQPHPEEVTENFNEHVNGDLDDANNTRRHLRKYNGPCLATNPIDRCWRCDKNWSKNRKKLADCALGFGRGTTGGKNGRFYVVQDSSDNDMLHPKPGTLRYAVIQDRPLWITFAHDMVIRLAEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLIRDSVTHYGIRTRSDGDGISMFGASNVWIDHVSMSNCQDGLIDAVMASTAITISNCHFAHHNDVILLGASDSHSDDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSRNPTIISQGNRFIAPPDPNCKEVTKRVYATESEWKTWNWRSEGDLLMNGAFFVQSGNPIRKYSKKDVIHAKPGTFVTRLTRFAGPLKCIRNKPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9286487 9290502 + Cp4.1LG09g10630.1 Cpe09g01067 475433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01067 437 PANTHER PECTATE LYASE 8 437 - -
Cpe09g01067 437 Pfam Pectate lyase, N terminus 28 79 IPR007524 GO:0030570
Cpe09g01067 437 Gene3D - 89 430 IPR012334 -
Cpe09g01067 437 SMART amb_all 164 361 IPR002022 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Cpe09g01067 437 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Cpe09g01067 437 PANTHER PECTATE LYASE 18-RELATED 8 437 IPR045032 GO:0030570
Cpe09g01067 437 Pfam Pectate lyase 175 355 IPR002022 -
Cpe09g01067 437 SUPERFAMILY Pectin lyase-like 80 431 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00605 Cpe-Chr7:4119676 Cpe09g01067 Cpe-Chr9:9286487 0 dispersed
Cpe09g01067 Cpe-Chr9:9286487 Cpe08g00382 Cpe-Chr8:2377087 1.20E-105 dispersed
Cpe01g01447 Cpe-Chr1:8663789 Cpe09g01067 Cpe-Chr9:9286487 0 wgd
Cpe03g00524 Cpe-Chr3:3085060 Cpe09g01067 Cpe-Chr9:9286487 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01067 K01728 - csv:101218812 770.385