Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01069 ATGGGGAAGTCGCCGGGGAAATGGATTAAAACTATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAACAGAGAGAAAAGTGGAAACGAGAAGGAAGTATTGGTTTCTGTCAAGGCTTCAGAGGCTACTTCTGTTATTACGCATACTGCAGCTTCGGAACCAACCCCAAATACCATTGAGACGAACGAAGTGGTGTCGAAAATTACCCACAATGAGGCAGCTAATGCGTCGTGTGAAAGATCGATATCAATTACAGGAAATCAAGATGCAGAAATTCAAGGTTCTACGTGCCAAGATGCTCCATCTGATCCTGAGAGAATCCGTAAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCACTTAGTGAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTGCTCGGGGAAGGAGAGTGAGGCTTTCTGATGTCGGTCTCGAAGCGCAAAACAAATATAGATTAGTGCAGCCACAGGAGCAGCTATTAGTGGCCCGTGCTGGAGTAAGTCTCTCGACACGTATGGCGAAGCTTTCAGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACAGCCAAACCTCTGCAAATCTATTTTGATAATGAAGATGAAAATTCAGCCTTGAAATGGTTAGAGCGCTGGTCAAATTCTCGATTCTGGAAACCGATTCCCCCAGTAAAAAAGGCTGCAGAGTTTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACGGGAGAGGGACATACCGTGAGGTCAAAACGCACGAGGAGAGTTCCCACTGTAAACAATGACAGTACTATCCAATCATCTGCAGAAGTCGAGAAACCTAAACGTACATTTAGGAAAGCTTCAAGTCACTCAGCTGCAGAGCAGGCTCAGGAGAATCCTCAGATGGAGCTTGAAAAGGTCAAGCGCAGTCTAAGAAAGGTCCATAACCCCATTCTCGAGAATCCTACCCCAATTGAAGCAGATGCGGAGAAGCCGAAGGAAAGTTCGGATAAGGTTTCTAATGGTCTAGGCCGTGACATTTTGGCCAGAGGTACTAATAATTCTTCTGAGAAAATGAAAAAAGAGGCTATCTCAACGATACCCGTCCAGCCTGATTTGGAAACAACTCCTGAGCCGATACCGATAAAGGAGGTACTTAATGTAACTAATGGTGAGCCAGTTGCAGAATCACAGCCTTTGATTGAGGGCAGTGATAAAGATAAGAGCATTGCTGGTAATGAGGCTGCTGTGGAGACTAAGCCTTTGACAGAGAGCTACCCTAAAGATACTATCAACCAATCATTAACAAATGGGGAATCAAACCATAAGGAAGATAACGCGAACAACGAGAACCCGAAATCTGGTAGGAAAGGCTCTACTCCAGCCAAGCAAGAACGAGTGGAGAACGGGTTGCAACACAGTCCAACCATACCTAGCTACATGGTAGCAACTGAATCTGCAAAGGCAAAACTAAGAGCACAAGGATCTCCAAGATTCGAACAGGAGAGTGAAAGAAATAACAACAATCGACGACATTCTTTACCGTCATCCACCAATGCTAAACTCAGCTCACCGTCTCCACGAACACAAAGACTTGTTCAAGCAGGCGGTAAAGGCGGAAACAAAAATGACAAGGCACACATGGGATCCAGAGATGGAAATGGTAAAATACTCATCATCTTACAAGCTACATATGAAAGCTTTAGCATTGATATCGATGCGGAATCCCGTTCCAACAGGAATACGATTATATTCTTCTTACTAATCCACAGCATCCATTTGAATATCGTTTAG 1890 44.34 MGKSPGKWIKTILFGKKSSKSNLSKNREKSGNEKEVLVSVKASEATSVITHTAASEPTPNTIETNEVVSKITHNEAANASCERSISITGNQDAEIQGSTCQDAPSDPERIRKEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEAQNKYRLVQPQEQLLVARAGVSLSTRMAKLSANAFTIKLASSTTAKPLQIYFDNEDENSALKWLERWSNSRFWKPIPPVKKAAEFKSQRRLSTGQTGEGHTVRSKRTRRVPTVNNDSTIQSSAEVEKPKRTFRKASSHSAAEQAQENPQMELEKVKRSLRKVHNPILENPTPIEADAEKPKESSDKVSNGLGRDILARGTNNSSEKMKKEAISTIPVQPDLETTPEPIPIKEVLNVTNGEPVAESQPLIEGSDKDKSIAGNEAAVETKPLTESYPKDTINQSLTNGESNHKEDNANNENPKSGRKGSTPAKQERVENGLQHSPTIPSYMVATESAKAKLRAQGSPRFEQESERNNNNRRHSLPSSTNAKLSSPSPRTQRLVQAGGKGGNKNDKAHMGSRDGNGKILIILQATYESFSIDIDAESRSNRNTIIFFLLIHSIHLNIV 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9301579 9305297 + Cp4.1LG09g10670.1 Cpe09g01069 475435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01069 629 MobiDBLite consensus disorder prediction 527 541 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 358 372 - -
Cpe09g01069 629 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cpe09g01069 629 Gene3D - 110 158 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 542 563 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 379 393 - -
Cpe09g01069 629 SMART iq_5 134 155 IPR000048 GO:0005515
Cpe09g01069 629 SMART iq_5 111 133 IPR000048 GO:0005515
Cpe09g01069 629 MobiDBLite consensus disorder prediction 418 584 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 268 396 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 295 309 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 497 513 - -
Cpe09g01069 629 ProSiteProfiles IQ motif profile. 136 158 IPR000048 GO:0005515
Cpe09g01069 629 Pfam Protein of unknown function (DUF4005) 492 574 IPR025064 -
Cpe09g01069 629 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Cpe09g01069 629 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Cpe09g01069 629 MobiDBLite consensus disorder prediction 457 474 - -
Cpe09g01069 629 PANTHER IQ-DOMAIN 5-RELATED 1 581 - -
Cpe09g01069 629 MobiDBLite consensus disorder prediction 333 347 - -
Cpe09g01069 629 PANTHER PROTEIN IQ-DOMAIN 31 1 581 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01069 - - - csv:101214198 917.531
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01069 Cpe20g00197 CCT
Cpe09g01069 Cpe20g00197 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00375 Cpe-Chr7:2417783 Cpe09g01069 Cpe-Chr9:9301579 8.95E-20 dispersed
Cpe09g01069 Cpe-Chr9:9301579 Cpe06g00243 Cpe-Chr6:1295976 8.13E-22 dispersed
Cpe20g00197 Cpe-Chr20:1131548 Cpe09g01069 Cpe-Chr9:9301579 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01069 Cpe_Chr09 FPKM 24.616554 26.725012 35.761017 35.364239 15.734823 11.857745 14.707788 63.599346 60.548565 61.532299