Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01070 ATGGGTAATTGCCTCCAAGCTCGCGCTAAGGTCAATATCTCTCTCAAATCGCTCCCTAATTCTGAAACACCAAATAATCAAGATAGGAAAGGTCATTCAACTGCTGCTTTGAGAGCTCCAGCACTTGGTGGGAATACTCCATCCAGAGGTCTTCAACCTAAAAGATCTGAAGGTGAAATATTGTTGTCTCCAAATCTGAAAGCCTTCACATACAGTGAGCTTAAGAATGCCACGAAAAGCTTCCGCCCCGACACTCTCATTGGAGAAGGAGGGTTCGGTCATGTTTACAAAGGATGGCTCGATGAACAAACGCTCGAATCAGTGAAGCCTGGAACTGGAATGGTTGTTGCTATCAAGAAGCTTAACTCTGAAGGCTATCAAGGCCACAAGGAATGGCTGGTAGTTTTCTCGTTCTTTTTATACGACCCGTTGATCTTTCGGGCTTATATGGGTGCACGACCACTTTCTTGGGCAATAAGGATCAAAGTTGCCATCGGAGCTGCTCGAGGGCTTTCCTTTCTGCACAACTCCGCAGAGCCAGTTATCTATCGCGATTTCAAGGCTTCGAACATCCTCTTAGATTCTGAATTCAATGCAAAGCTTTCGGACTTTGGTTTGGCGAAAGCAGGCCCAACTGGTGATCGGAGTCATGTGTCCACTCGGGTCATTGGTACTCAAGGCTATGCTGCTCCAGAATACATTGCCACCGGTATGCTAACAGCCAAGTGTGATGTGTATAGCTTTGGGGTCGTGCTACTAGAGCTCCTCTCGGGAAGACGTGTTGTAGATAAAACTAAAGTCGGCGTCGAACAGCATCTTGTGGATTGGGCAAGACCTTATCTAGCCGATAAGCGCAAGTTATTTCGGATAATGGACACCAGGTTGGAGGGGAAATACCCACAAAAAGCTGCTTACATGACTACAATCCTTGCGTTGCAGTGCATTCGGGAGGCAAAATTCCGACCACTGATGTCGGAAGTTTTATATGCTCTGGAACAGCTCCTCCTGGTTAAGCCCACCGATAACCAAAGAGCAAGCAGTCCAGGACCGAAGTCCCCAGTAACACATAATTTACCTTCACCTGTAAATTCCACAACACAGAAAGGGAGCTCTCCATTACCATCCATATGA 1131 46.77 MGNCLQARAKVNISLKSLPNSETPNNQDRKGHSTAALRAPALGGNTPSRGLQPKRSEGEILLSPNLKAFTYSELKNATKSFRPDTLIGEGGFGHVYKGWLDEQTLESVKPGTGMVVAIKKLNSEGYQGHKEWLVVFSFFLYDPLIFRAYMGARPLSWAIRIKVAIGAARGLSFLHNSAEPVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTRVIGTQGYAAPEYIATGMLTAKCDVYSFGVVLLELLSGRRVVDKTKVGVEQHLVDWARPYLADKRKLFRIMDTRLEGKYPQKAAYMTTILALQCIREAKFRPLMSEVLYALEQLLLVKPTDNQRASSPGPKSPVTHNLPSPVNSTTQKGSSPLPSI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9305884 9309667 - Cp4.1LG09g10740.1 Cpe09g01070 475436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01070 376 PANTHER OS01G0588500 PROTEIN-RELATED 145 365 - -
Cpe09g01070 376 SUPERFAMILY Protein kinase-like (PK-like) 59 332 IPR011009 -
Cpe09g01070 376 PANTHER BNAC02G17010D PROTEIN 145 365 - -
Cpe09g01070 376 PANTHER BNAC02G17010D PROTEIN 20 133 - -
Cpe09g01070 376 PANTHER OS01G0588500 PROTEIN-RELATED 20 133 - -
Cpe09g01070 376 MobiDBLite consensus disorder prediction 16 56 - -
Cpe09g01070 376 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Cpe09g01070 376 Pfam Protein kinase domain 162 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01070 376 Gene3D Transferase(Phosphotransferase) domain 1 145 347 - -
Cpe09g01070 376 Gene3D Phosphorylase Kinase; domain 1 52 138 - -
Cpe09g01070 376 MobiDBLite consensus disorder prediction 16 32 - -
Cpe09g01070 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Cpe09g01070 376 MobiDBLite consensus disorder prediction 341 376 - -
Cpe09g01070 376 ProSiteProfiles Protein kinase domain profile. 81 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01070 - - - bhj:120083681 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01070 Cpe-Chr9:9305884 Cpe05g00923 Cpe-Chr5:6065716 2.57E-124 dispersed
Cpe20g00196 Cpe-Chr20:1128992 Cpe09g01070 Cpe-Chr9:9305884 3.66E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g526 Blo04g00764 . . . . . . . Cmo13g00966 Cmo18g00094 . . . . . . . . . . . . . . . . . . . . . Cone2ag0855 . . . Lsi02g00304 Csa01g00783 Chy12g01332 Cme12g01761 . . . . . Bpe15g00609 . . . . . Cma13g00936 Cma18g00122 Car13g00776 Car18g00112 Cpe09g01070 . Bhi08g01398 . . . . . . Cla01g01432 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001456 1 3 2 0 2 0 4 0 0 2 1 0 4 3 0 4 0 0 4 0 3 0 0 0 0 3 0 0 0 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62629 PF00069 Pkinase 1.30E-24 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01070 Cpe_Chr09 FPKM 1.20164 1.036235 1.051892 1.006102 1.945815 1.456299 2.88603 5.563559 4.805425 5.549109