Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01082 ATGTCTGCAGTGGAAGAGAAGCTAGAGGAAATCGAACCTTCAACAAGGAATAATGAGGAGCCAGTGGAAGAAGATGATGAAGAGGAGGACCTTTCGTGGTCATCAGACTCTGAGATTGGAGAAGCATTGGACTGGTTGGATGCTAAGGAAGATCGTGAGGCAGATGGGGCTTTTTCACTCAATGCTAGGCGTCCTAATGCTCATGGTGGGCTTTATTCTCGTCATAATTCCTCAACTCTTCAACCTCTCTCAAATCGAAACCAGAAGTTTACCAATCATATTCGAGCTTCACCTCTTGGGGAATGGGAAGGGAGGTTTAATGTAGGAATGTCAAACTCTGTTACCACTGCCATTCGTGACAGTGTCAAGGAAATGGCGATAGGAAAAACGAAAACTACAGAGAAAGCTGATCGTGCAACTGTCGAACAGGCAATAGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAATCGAGGCGTTTTTCATGACATTAATGGCTGCATTTCTACTGGTAAAGAAGCTAATGTTTATCATGCAACAAAATCCGATGGTCAAGAATTCGCTGTCAAAATCTACAAAACTTCAGTTTTGGTGTTTAAGGATAGGGATCGCTATGTCCAAGGTGACTACCGTTTCCGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCCGAGAAGGAAATGAGGAACTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTCTCCTCTTGAGATTGCATGTTTTGGTCATGGAATTCATCGGTAAGACAGGTTGGGCTGCACCTCGTCTCAAGGACGCTGCCTTGTCGTTGAACAGGTTACGTGAAAGTTATTTGGAGGTTATTATTACAATGCGGACCCTCTACCAGAAATGCAAGCTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAATCTGTTGATCTCGACCACCCTCATGCCCTCGATTTCCTTCGTGAAGATTGTCTTCACGTTTCTGATTTCTTCAAAAAACATGGTGTTGCTGTAATGACAATACGAGAACTGTTCGATTTTATAGTCGATCCATGCCTCACTGATGAGACGATTGATAGTTATCTAGAGGAGCTGCAAGAAAAAATCTCGGCAAGAGGTGATATATCAGTGGAGGATGAGATTGCAGATTCTGTATTTGTGCAGTCGTATATTCCGAAGACGTTGGATAGTGTCAAACATGCGGAGGAGGATGTAATACGTTTAACAAGTGGTCAGAACACTGAAGATATGTACTACAAGACCATTACAGGGTTAAAACAGGCTCTTCCAAGAGTTCAACCTGCATCAGAGCTAGAACACGACGCAGACCCGATTGAACAGTCCGAAAATTTAACCGGTTTGTCAAATTCTTGCGAGAAGGAAACCGAATCAATGTCAGAGGCAGATGAAGAGAGCTCGGATGAGTCGGAAGAAGAAGACGGACCAAATTCTTCAACTGAGACGACGACTCAAACACCAGCTGAGAGGAAAGCTGCCAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGTCCCGCAAAAACAAGGTTCCAAAGGCTGTAAAGAAGAGGAAGAAGAAGTTGGCTAAGTCCCACAAGTAA 1668 43.23 MSAVEEKLEEIEPSTRNNEEPVEEDDEEEDLSWSSDSEIGEALDWLDAKEDREADGAFSLNARRPNAHGGLYSRHNSSTLQPLSNRNQKFTNHIRASPLGEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAVKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEVIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDSYLEELQEKISARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPASELEHDADPIEQSENLTGLSNSCEKETESMSEADEESSDESEEEDGPNSSTETTTQTPAERKAARKENKKKVKEEKRESRKNKVPKAVKKRKKKLAKSHK 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9369386 9374168 + Cp4.1LG09g10850.1 Cpe09g01082 475448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01082 555 MobiDBLite consensus disorder prediction 57 86 - -
Cpe09g01082 555 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 303 314 IPR018935 GO:0004674|GO:0005524
Cpe09g01082 555 Gene3D Transferase(Phosphotransferase) domain 1 270 411 - -
Cpe09g01082 555 Pfam RIO1 family 176 363 - -
Cpe09g01082 555 CDD RIO1_euk 165 354 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 19 35 - -
Cpe09g01082 555 PIRSF STPK_RIO1 2 555 IPR017407 GO:0004674
Cpe09g01082 555 Coils Coil 517 537 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 484 502 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 1 18 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 453 555 - -
Cpe09g01082 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 22 553 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 538 555 - -
Cpe09g01082 555 SUPERFAMILY Protein kinase-like (PK-like) 165 350 IPR011009 -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 71 86 - -
Cpe09g01082 555 Gene3D Phosphorylase Kinase; domain 1 162 264 - -
Cpe09g01082 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 22 553 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 1 39 - -
Cpe09g01082 555 MobiDBLite consensus disorder prediction 514 537 - -
Cpe09g01082 555 SMART rio_2 134 370 IPR000687 GO:0004674|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01082 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 906.746
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00774 Cpe-Chr8:6174129 Cpe09g01082 Cpe-Chr9:9369386 3.10E-09 dispersed
Cpe09g01082 Cpe-Chr9:9369386 Cpe14g00854 Cpe-Chr14:7063240 2.95E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01082 Cpe_Chr09 FPKM 14.619605 16.464699 23.546913 23.687889 13.165301 12.499939 11.670793 36.131725 34.404644 31.758537