Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01087 ATGAACTCTTTCGAGAAAACGCCTGAAAGGCGCTTACCTCTTTATTCCGATGGCTCTCCCTCTTCTTACGGTAAAGATCATTCAAAATTGGGGCACAAGAAGCAATTAATCAGGAAACGAGGCGGATTTGTATTTCGAGTTTACGAGCATGTTAAATTGGGGCCTAAATTCTCGGTTACTGCCAGAGGAAAATTGAGATTAGGGGCAAAAATTATACGACAAGGTGGTAGAAAGAACATATTCAAACATGCTTTTGGGATTGTAGAAGGAGAAGAGCTTTTGAAGGCCTCTCAATGTTACTTATCAACAAGCGCAGGACCCATTGCAGGGCTTCTTTTCATGTCCACACACAGGGTTGCTTTCTGCAGTGAGCAAAGTATCACTTTCCCTTCACCAACTGGAGAACTGATCAAAACTCAGTACAAGGTTATGATACCATTAAAGAAGGTCATAAAGGCCAACCAAAGCGAGAATGTTAGTGAGCCAGATATGAAGTATATAGAAGTGGTGACGGATGACAACTTTGATTTCTGGTTTATGGGATTCTTGAGATATGAGAAGGCATTTAAAACTCTCCGGAAGGCCATTTCCATGGCTCACAGATGTTGA 609 41.71 MNSFEKTPERRLPLYSDGSPSSYGKDHSKLGHKKQLIRKRGGFVFRVYEHVKLGPKFSVTARGKLRLGAKIIRQGGRKNIFKHAFGIVEGEELLKASQCYLSTSAGPIAGLLFMSTHRVAFCSEQSITFPSPTGELIKTQYKVMIPLKKVIKANQSENVSEPDMKYIEVVTDDNFDFWFMGFLRYEKAFKTLRKAISMAHRC 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9407768 9411250 - Cp4.1LG09g10910.1 Cpe09g01087 475453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01087 202 MobiDBLite consensus disorder prediction 1 32 - -
Cpe09g01087 202 Gene3D - 77 197 IPR011993 -
Cpe09g01087 202 PANTHER OSJNBA0038O10.18 PROTEIN 24 197 - -
Cpe09g01087 202 Pfam GRAM domain 81 200 IPR004182 -
Cpe09g01087 202 PANTHER GEM-LIKE PROTEIN 2 24 197 IPR037848 -
Cpe09g01087 202 SMART gram2001c 79 157 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01087 - - - csv:101206983 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01087 Cpe-Chr9:9407768 Cpe13g00511 Cpe-Chr13:5239927 1.11E-61 dispersed
Cpe09g01087 Cpe-Chr9:9407768 Cpe13g00510 Cpe-Chr13:5233766 8.71E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g929 . . . . . . . . . Cmo18g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00756 . . . . . . . . . . . . . . Cma18g00104 . . Cpe09g01087 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000142 3 13 4 2 2 7 4 7 7 6 6 6 11 8 8 11 6 2 9 6 8 5 5 6 8 8 6 15 13 9 211
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01087 Cpe_Chr09 FPKM 14.422536 15.908693 32.010834 30.137743 14.399391 18.977003 16.326044 19.112516 17.918665 17.1696