Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01091 ATGGGTTGTCAAGCCGTTGCCAAGCTCATAGGGTCGGCCATTAATCGAAAAGCTTCTTCTTCTTCATCTTCATCATCCTCTGTGTTTTCGCAGGCGGCGTCGCAGATTCGGCATTACGCAGCTGCACCGCCACCACCGCCGGCGGTATTCGTAGATAAAAACACTCGCGTCATATGTCAAGGGATCACTGGTAAAAACGGTACCTTCCACACTGAGCAGGCAATCGAATATGGCACGAAAATGGTTGGTGGTGTAACGCCAAAGAAGGGTGGAACCGAACACTTGGGACTTCCTGTTTTTAACACAGTTGCTGAAGCCAAAGCTGAAACGAAGGCCAATGCATCAGTAATTTATGTCCCTCCGCCGTTTGCTGCAGCAGCTATCTTGGAGGCGATGGAAGCTGAGCTAGATCTTGTAGTTTGTATAACGGAAGGGGTCCCACAGCATGATATGGTAAGAGTTAAGGCTGCTTTAAACAGACAATCTAAAACTAGGTTGATTGGCCCTAACTGCCCTGGTATTATCAAGCCTGGAGAGTGTAAAATTGGAATTATGCCTGGGTACATCCACAAACCTGGGCGCATTGGTATTGTATCACGATCTGGCACCTTGACGTATGAAGCAGTTTTCCAAACTACTGCTGTTGGCCTTGGACAATCCACGTGCGTAGGTATTGGAGGGGATCCCTTCAACGGGACAAACTTTGTTGATTGCATCGAGAAGTTCCTTGCTGATCCTCAGACAGAAGGTATTGTTCTAATTGGAGAAATTGGTGGGACTGCGGAAGAGGATGCTGCTGCTTTGATAAAGGAAAGTGGGACTGAGAAGCCTATCGTTGGCTTCATTGCTGGCCTTACTGCTCCCCCAGGCCGTCGCATGGGTCATGCTGGAGCCATTGTTTCGGGTGGAAAAGGTACTGCCCAAGACAAAATCAAGACACTGCGAGAAGCTGGAGTAACAGTGGTCCAGTCGCCTGCGAAAATTGGCGTTGCAATGCTTGATGTCTTCAAACAGAGAGGCCTCGTCAGTTAA 1032 48.74 MGCQAVAKLIGSAINRKASSSSSSSSSVFSQAASQIRHYAAAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGVPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTEKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVQSPAKIGVAMLDVFKQRGLVS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9440611 9445646 + Cp4.1LG09g10820.1 Cpe09g01091 475457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01091 343 SUPERFAMILY Succinyl-CoA synthetase domains 170 338 IPR016102 -
Cpe09g01091 343 PRINTS Succinyl-CoA synthase signature 128 145 - -
Cpe09g01091 343 PRINTS Succinyl-CoA synthase signature 224 242 - -
Cpe09g01091 343 PRINTS Succinyl-CoA synthase signature 255 268 - -
Cpe09g01091 343 PRINTS Succinyl-CoA synthase signature 288 305 - -
Cpe09g01091 343 SMART CoA_binding_2 50 146 IPR003781 -
Cpe09g01091 343 Gene3D - 168 341 IPR016102 -
Cpe09g01091 343 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 15 342 - -
Cpe09g01091 343 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 284 297 IPR017440 -
Cpe09g01091 343 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 15 342 - -
Cpe09g01091 343 Pfam CoA-ligase 198 319 IPR005811 GO:0003824
Cpe09g01091 343 PIRSF SucCS_alpha 46 339 IPR005810 GO:0003824
Cpe09g01091 343 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 47 336 IPR005810 GO:0003824
Cpe09g01091 343 Pfam CoA binding domain 52 145 IPR003781 -
Cpe09g01091 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 169 IPR036291 -
Cpe09g01091 343 Gene3D - 48 167 - -
Cpe09g01091 343 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 199 228 IPR033847 -
Cpe09g01091 343 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 50 335 IPR005810 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01091 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - csv:101206269 618.616
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01091 Cpe20g00178 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01091 Cpe-Chr9:9440611 Cpe12g00323 Cpe-Chr12:2131617 2.04E-23 dispersed
Cpe20g00178 Cpe-Chr20:1010439 Cpe09g01091 Cpe-Chr9:9440611 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01091 Cpe_Chr09 FPKM 0.0 0.0 0.0 0.0 0.42778 0.0 0.0 0.0 0.0 0.0