Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01095 ATGCAGATTTCGTCCGTGAAGCTAGAAGATTTCTATGTCGATCTCTTGCATCGGTGTGTTCAAACCTCCGATTCCCGCCATGGATCGGCAATTCATGCGAAGTTTCTCAAAGGATTTCTTCCATGTTCTCTTTTCTTCCACAACCATGTACTTAATTTCTATGTCAAATGTGGAAGTCTCTCATGTGGTCTGCAACTGTTCGACGAAATGCCTGAGAGAAATGTTGTGTCCTGGTCTGCATTAATTGCTGGGTTCGTCCAACACGGCCGACCCAATGAAGCCCTCTCTCTGTTTAGCCGCATGCATTGTGATGGCACGATCATTCCCAACGAATTCACCCTTGTAAGTGCTCTTCATGCTTGTTCTTTAACTCAGAGGCTGATATGTTCGTACCAAATTTACGCATTAGTTCTTCGCTTAGGATATGGGTCGAATATTTTCCTCATGAATGCGTTCTTAACTGCTTTAATTAGGCATGAGAAATTGCTGGACGCTTTAGAAGTTTTTGAGAGTTCTTCATCCAAGGATATTGTATCATGGAATGCTATGATGGCTGGTTATTTGCAATTATCATATCTAGAACTGCCTAAGTTTTGGCGCCGGATGAATCTCGAGAACATTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTCTCTCTGAGTTTAAACTGGGTTTGCAAGTTCATGGACAGCTTGTGAAAAGTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAATCAGAAATTGTTTGATGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTGTGTTCTTGGACTCAGATGGCTGCAGGGTGCCTCCATTGTGGTGAACCAATGAAGGCACTCGAGCTGTTGGGAGAGGTTATTTGA 915 41.86 MQISSVKLEDFYVDLLHRCVQTSDSRHGSAIHAKFLKGFLPCSLFFHNHVLNFYVKCGSLSCGLQLFDEMPERNVVSWSALIAGFVQHGRPNEALSLFSRMHCDGTIIPNEFTLVSALHACSLTQRLICSYQIYALVLRLGYGSNIFLMNAFLTALIRHEKLLDALEVFESSSSKDIVSWNAMMAGYLQLSYLELPKFWRRMNLENIKPDNFTFASILTGLAALSEFKLGLQVHGQLVKSGYGNDICVGNSLCDMYIKNQKLFDGFKAFDEMPSSDVCSWTQMAAGCLHCGEPMKALELLGEVI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9464618 9466910 - Cp4.1LG09g11050.1 Cpe09g01095 475461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01095 304 TIGRFAM PPR: pentatricopeptide repeat domain 76 106 IPR002885 -
Cpe09g01095 304 TIGRFAM PPR: pentatricopeptide repeat domain 47 76 IPR002885 -
Cpe09g01095 304 Gene3D Tetratricopeptide repeat domain 191 304 IPR011990 GO:0005515
Cpe09g01095 304 Gene3D Tetratricopeptide repeat domain 4 132 IPR011990 GO:0005515
Cpe09g01095 304 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 5 302 - -
Cpe09g01095 304 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Cpe09g01095 304 PANTHER OS07G0578800 PROTEIN-RELATED 5 302 IPR045215 GO:0003723|GO:0009451
Cpe09g01095 304 Pfam PPR repeat 279 302 IPR002885 -
Cpe09g01095 304 Pfam PPR repeat family 73 121 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01095 - - - csv:101211489 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01095 Cpe-Chr9:9464618 Cpe09g00103 Cpe-Chr9:577024 1.37E-18 dispersed
Cpe09g01095 Cpe-Chr9:9464618 Cpe03g00167 Cpe-Chr3:835756 4.51E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01095 Cpe_Chr09 FPKM 1.547953 2.241217 2.39906 2.51927 4.79059 3.436493 4.781203 5.439278 5.014558 5.818382