Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01101 ATGGTGGCTCATCTCTCCTCTCTTGACCCTTTGTCTAATTGCTTTCATACCAATGGAACCAATTCCAAAAGAAAAAGACGACCCGCGGGCACTCCCGACCCAGATGCCGAGGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCAGATAGTTACGTATGTGAAATATGTCATCAGGGTTTTCAGAGAGATCAAAATCTACAAATGCATCGGCGTCGACATAAGGTGCCGTGGAAGTTATTGAAGAAGACCGAGACGACGACGACGACGACGACAACGCGTAAACGGGTGTTTGTTTGTCCGGAACCGAGCTGCTTACATCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATTAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTATGTGAAAAATGCTCTAAAGGGTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACGTGTGGGACTAGAGGCCATTCATGTGACTGTGGTCGAGTCTTCTCAAGGGTGGAGAGTTTCATAGAGCATCAAGATAGTTGCAAATTGGGTCATCATCAACAACCAGAAAAGGAGGCATCTTTACAACCACCACCACCACCACCACCACCTTGTTTATCAAGAACAGCTTCAAGCCCAACTCCAACTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAACCCACACACCAAAAACTCCCCAAAAACTCATCACCCATCATCAAAATTTAGACCTTCAACTTTCAACCTCTTCAAATTCCATTAAAGTTTCAGTTTCTCCAAAAAAACATGAAATTTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGAAAAAATTGAACAAAAAGATCATTACCAAATGAATTTTGATGAACAAATTGGAAATGGGTTGAATTTATTGAAGCTGAAAGAAGAAGCTAAAGAGAGAATGAGAGTAGCAAGGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAACAGATTGAATTGGCTGAGAAAGAGTTAGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAACAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACACTTTCATCCATTGCACAAAACTTGA 1188 41.41 MVAHLSSLDPLSNCFHTNGTNSKRKRRPAGTPDPDAEVVSLSPKTLLESDSYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKKTETTTTTTTTRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQPEKEASLQPPPPPPPPCLSRTASSPTPTPSSDTNFSFLNQTHTPKTPQKLITHHQNLDLQLSTSSNSIKVSVSPKKHEIYSTHLQLSIGSCNYGEKIEQKDHYQMNFDEQIGNGLNLLKLKEEAKERMRVAREEKAVAEEARNEAKKQIELAEKELANAKRMRQQAQAELQRALALKEHAINKINSTILQITCQVCRQHFHPLHKT 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9501073 9503247 + Cp4.1LG09g10940.1 Cpe09g01101 475467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01101 395 PANTHER OS03G0310200 PROTEIN 4 391 IPR039288 GO:0009630
Cpe09g01101 395 MobiDBLite consensus disorder prediction 183 232 - -
Cpe09g01101 395 MobiDBLite consensus disorder prediction 212 232 - -
Cpe09g01101 395 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Cpe09g01101 395 SMART c2h2final6 98 128 IPR013087 -
Cpe09g01101 395 SMART c2h2final6 134 161 IPR013087 -
Cpe09g01101 395 SMART c2h2final6 52 74 IPR013087 -
Cpe09g01101 395 Gene3D Classic Zinc Finger 29 101 - -
Cpe09g01101 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Cpe09g01101 395 MobiDBLite consensus disorder prediction 14 38 - -
Cpe09g01101 395 Coils Coil 310 372 - -
Cpe09g01101 395 MobiDBLite consensus disorder prediction 194 211 - -
Cpe09g01101 395 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 4 391 - -
Cpe09g01101 395 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01101 Cpe20g00169 CCT
Cpe09g01101 Cpe20g00169 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01101 Cpe-Chr9:9501073 Cpe20g00005 Cpe-Chr20:40531 1.08E-155 dispersed
Cpe20g00169 Cpe-Chr20:959200 Cpe09g01101 Cpe-Chr9:9501073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50045 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01101 K25871 - csv:101210748 545.428