Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01104 ATGGCTCTGGTTCGTGATCGCCGCCAGTTAAAACTCCGCCTCCCGGACCTCTCCGACTGCGGTCCCCGCTTCCCCCTCCCCCTCCCACCCTCCTCTGCCCCTGCCATCTCCTCCGCCGACCTCGAAAAACTCCAAGTCCTCGGGCACGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACCTCCAACATCTACGCTCTCAAGGTCGTCCACGGCGACGGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCTTACGTCGTGAAATGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCTAGGTTCGCTTGATACGCTCTTGAAGAAGAATACCACGTTGTCTGAGGCCACGCTCGCTCACGTATCGCGTCAGGTTCTTAATGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTCTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTGGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCGTGGTCAGAGACCGGATTGGGCGACTCTGATGTTTGCGATTTGCTTTGGTGAGCCGCCGACGCTGCCAGAGGATGCGTCAGAGGAGTTTCGAAGCTTCGTCCAGAGTTGTTTGCAGAAGGAATCGAGCAAGAGATGGACGGCGGCGCAATTATTAACGCATCCGTTTGTGTGTAAGGAATCGAGATCTGATCAGTGA 933 52.63 MALVRDRRQLKLRLPDLSDCGPRFPLPLPPSSAPAISSADLEKLQVLGHGNGGTVYKVRHKRTSNIYALKVVHGDGDPTVRRQVFREMEILRRTDSPYVVKCHGIFEKPSGDVTILMEYMDLGSLDTLLKKNTTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPRGQRPDWATLMFAICFGEPPTLPEDASEEFRSFVQSCLQKESSKRWTAAQLLTHPFVCKESRSDQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9526182 9527114 + Cp4.1LG09g10930.1 Cpe09g01104 475470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01104 310 SMART serkin_6 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cpe09g01104 310 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 Gene3D Transferase(Phosphotransferase) domain 1 123 310 - -
Cpe09g01104 310 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 307 - -
Cpe09g01104 310 CDD PKc_MAPKK_plant_like 39 302 - -
Cpe09g01104 310 Gene3D Phosphorylase Kinase; domain 1 30 121 - -
Cpe09g01104 310 Pfam Protein kinase domain 42 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Cpe09g01104 310 SUPERFAMILY Protein kinase-like (PK-like) 41 304 IPR011009 -
Cpe09g01104 310 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01104 Cpe-Chr9:9526182 Cpe18g00340 Cpe-Chr18:4849508 2.33E-74 dispersed
Cpe20g00165 Cpe-Chr20:929013 Cpe09g01104 Cpe-Chr9:9526182 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62630 PF00069 Pkinase 6.60E-67 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01104 K20604 - csv:101203133 562.377