Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01104 ATGGCTCTGGTTCGTGATCGCCGCCAGTTAAAACTCCGCCTCCCGGACCTCTCCGACTGCGGTCCCCGCTTCCCCCTCCCCCTCCCACCCTCCTCTGCCCCTGCCATCTCCTCCGCCGACCTCGAAAAACTCCAAGTCCTCGGGCACGGCAACGGCGGCACAGTCTACAAAGTCCGCCACAAGCGCACCTCCAACATCTACGCTCTCAAGGTCGTCCACGGCGACGGCGATCCCACCGTTCGCCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACGGACTCTCCTTACGTCGTGAAATGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCTAGGTTCGCTTGATACGCTCTTGAAGAAGAATACCACGTTGTCTGAGGCCACGCTCGCTCACGTATCGCGTCAGGTTCTTAATGGCCTTCACTACCTTCACTCTCATAAAATCATTCATCGCGATATTAAACCGTCGAATCTCTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGAGACATATGGAGTTTAGGCCTTACTCTTCTGGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCGTGGTCAGAGACCGGATTGGGCGACTCTGATGTTTGCGATTTGCTTTGGTGAGCCGCCGACGCTGCCAGAGGATGCGTCAGAGGAGTTTCGAAGCTTCGTCCAGAGTTGTTTGCAGAAGGAATCGAGCAAGAGATGGACGGCGGCGCAATTATTAACGCATCCGTTTGTGTGTAAGGAATCGAGATCTGATCAGTGA 933 52.63 MALVRDRRQLKLRLPDLSDCGPRFPLPLPPSSAPAISSADLEKLQVLGHGNGGTVYKVRHKRTSNIYALKVVHGDGDPTVRRQVFREMEILRRTDSPYVVKCHGIFEKPSGDVTILMEYMDLGSLDTLLKKNTTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPRGQRPDWATLMFAICFGEPPTLPEDASEEFRSFVQSCLQKESSKRWTAAQLLTHPFVCKESRSDQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9526182 9527114 + Cp4.1LG09g10930.1 Cpe09g01104 475470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01104 310 SMART serkin_6 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cpe09g01104 310 ProSiteProfiles Protein kinase domain profile. 41 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 Gene3D Transferase(Phosphotransferase) domain 1 123 310 - -
Cpe09g01104 310 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 307 - -
Cpe09g01104 310 CDD PKc_MAPKK_plant_like 39 302 - -
Cpe09g01104 310 Gene3D Phosphorylase Kinase; domain 1 30 121 - -
Cpe09g01104 310 Pfam Protein kinase domain 42 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe09g01104 310 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Cpe09g01104 310 SUPERFAMILY Protein kinase-like (PK-like) 41 304 IPR011009 -
Cpe09g01104 310 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01104 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01104 Cpe-Chr9:9526182 Cpe18g00340 Cpe-Chr18:4849508 2.33E-74 dispersed
Cpe20g00165 Cpe-Chr20:929013 Cpe09g01104 Cpe-Chr9:9526182 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00340 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 5.8e-136 481.1
Cpe04g01040 CST 121 444 MAP Kinase Kinase Gene Family AT4G26070 67.6 3.1e-129 458.8
Cpe07g01073 . 67 391 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.9e-127 452.2
Cpe07g01036 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.7 2.5e-107 386.0
Cpe11g01143 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 9.6e-107 384.0
Cpe18g00340 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 7.0e-134 474.2
Cpe04g01040 CST 121 417 MAP Kinase Kinase Gene Family AT4G29810 69.7 1.5e-123 439.9
Cpe07g01073 . 41 365 MAP Kinase Kinase Gene Family AT4G29810 63.1 8.6e-116 414.1
Cpe07g01036 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 8.4e-111 397.5
Cpe11g01143 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 1.7e-108 389.8
Cpe03g00581 . 36 497 MAP Kinase Kinase Gene Family AT5G40440 76.4 3.2e-215 745.0
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 69.2 5.8e-126 448.0
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT1G51660 56.9 2.0e-102 369.8
Cpe20g00165 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.8e-82 303.5
Cpe09g01104 . 31 308 MAP Kinase Kinase Gene Family AT1G51660 54.3 1.2e-81 300.8
Cpe02g01751 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.0 5.0e-127 451.4
Cpe03g01040 . 1 281 MAP Kinase Kinase Gene Family AT3G21220 56.0 1.7e-103 373.2
Cpe20g00165 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.2e-83 307.4
Cpe09g01104 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-82 302.0
Cpe11g01143 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.4 6.4e-170 594.0
Cpe07g01036 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 7.1e-169 590.5
Cpe18g00340 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 3.0e-119 425.6
Cpe04g01040 CST 121 443 MAP Kinase Kinase Gene Family AT5G56580 57.7 1.3e-109 393.7
Cpe07g01073 . 41 380 MAP Kinase Kinase Gene Family AT5G56580 56.4 3.5e-107 385.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.0e-107 385.6
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.4 2.1e-105 379.4
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 2.7e-76 282.7
Cpe03g01040 . 37 249 MAP Kinase Kinase Gene Family AT1G18350 55.0 2.8e-65 246.1
Cpe20g00165 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.5e-79 292.7
Cpe09g01104 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.5 1.8e-77 286.6
Cpe20g00165 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.7e-113 406.4
Cpe09g01104 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 66.1 5.9e-111 397.9
Cpe02g01751 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.5e-77 287.0
Cpe03g01040 . 39 249 MAP Kinase Kinase Gene Family AT1G73500 55.6 3.4e-66 249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62630 PF00069 Pkinase 6.60E-67 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01104 Cpe_Chr09 FPKM 62.513683 58.545475 0.0 0.0 0.0 0.0 0.0 0.098422 0.10262 0.0