Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01109 ATGGCAGCAGATGGCCGGAGACGAGCAAACAAAAGTCTCGAGACCCTTCTCGATAACGACAAGGTTGTCGCTCCGCCACCGCAGCTGCAAGTCAAGTTGTTGCCGGGACAAGGCTTGGAATTCAACAACTTGTCATATAGTGTTCTAAAGAAGTTTAAAAAGGATGGTGTTTGGATCAAAAGAGAAGCTTATCTTTTGAATGATATCTCTGGACAAGCGATGCGAGGTGAAATCATGGCTATCATGGGGCCGAGTGGCGCTGGGAAATCGACATTTCTTGATGCCTTGGCTGGTCGGATGGCGAAAGGAAGCCTTGAAGGATCTGTTAAGATTGATGGAAGACCTGTGACTGCAAGTTACATGAAGATGGTTTCATCTTATGTTATGCAAGATGACCAACTCTTCCCAATGTTAACTGTGTTTGAAACATTCATGCGAGGAGTGTCGGGAGGCGAACGACGAAGAGTGTCGATAGGAATCGACATCATCCACAAACCGTCGCTCTTATTTTTGGACGAGCCGACCTCGGGGCTTGATTCTACGAGTGCTTATAGTGTAGTAGAGAAGGTGAAAGAGATAGCTCGAAATGGCAGCATTGTTCTGATGACCATTCATCAACCTTCTTACAGAATTCAACTACTACTTGATCGCATCACTGTTCTTGCCAGGGGGAGATTGATATACGTTGGAAATCCATTCAACCTTTCTGCTCATCTCTCTGGCTTTGGAAGGCCAGTGCCAGATGATGAAAATGGCATAGAATATCTATTGGATGTGATCAAGGAATACGACGAATCAAATGTCGGGTTGGAGCCTCTCGTGCTATACCAACGACACGGTATCAAACCCGATCTAGTTGCAAAGACTCCTGTTTCGAAAACACCTAAAGCTCCTTACAAAAACGGTCTGGGGCCAGGACCGAAGTTCCTAAACCTTCGTAGTCAAGCATTCTCCATGACATCAGGGCCAAACTCGAGCCAATTTGATTCAGCATATGGATATGATGATAACGAGGACGATGACTTTGATAAATCTCTCGAACGTAAATCAGCTAGAACTCCGATGAATAGTCGTAGCGGTGTTTACTACCCTCCTTTAGCATCTCAATTCTACAAAGATTTATCTGCTTGGGTCTATAATGGTGTTAAAGGAACTCCTGGTCGACGACCATCGTGGACTCCTGCAAGGACGCCGGGACAAACACCAGGAAAAACACCTATATCCGGAGTTAGAAGTGTCGTTTCGAGTCAATTTCCGTCATCTCATCAAACGACTACTCATGCAAAAATACCTTCCGTCTTCAACATGTCAATGGACTCTCATTTACCTTCTTTTGAAGAGTTGGACCTGGAAGAAGTTCTTGATGAGCCAGACCATGGTCCCAAATATGCAAATCCTTGGCTCCGTGAGGTCGTCGTGCTTTCATGGAGGACGATGCTCAACGTGATCCGCACCCCAGAATTGTTTCTATCTCGCGAGATTGTATTGACAGTAATGGCGATAATTCTTTCGACGATGTTCAAAAATCTCGGGCATGCTACGTTTAGAGACATCAACAGACTTCTCAACTTCTACATCTTTGCAGTTTGTCTCGTTTTCTTTTCCTCAAACGACGCTGTCCCGACATTCATTCAAGAAAGATTCATCTTCATCAGAGAGACATCTCACAATGCATATCGAGCTTCGTCATACGTCATTTCCTCCCTCATTGTCTATCTCCCATTTTTCGCGATTCAAGGCTTCACATTTGCAGCCATAACCCAATTCTGGCTACACTTGAAAAGCAACCTGTTCTTCTTCTGGATATCACTTTTTGCCTCACTCATCACAACAAATGCATATGTTATGCTTGTGAGTGCGTTGGTACCAAGCTATATCACAGGCTATGCAGTTGTAATAGCCACCACAGCCATTTTCTTCCTCACTTGTGGATTCTTCCTGAAACGAACTCAAATACCAATATACTGGAGATGGCTTCATTACATCTCAGCAATAAAGTATCCATTTGAATCCTTGTTGATCAACGAATTCAAAGGGACAAGATGTTATCAAGGAAATCCCAACGATCTTTCGCCCGGGCCGTTGGGAGATGTTAGGATTAGCAAGCTGCACAATGTTTCTAGAGATTTGCAGCCAAACTGCATGCTGATCGGAGAAGACGTTCTGTTCTCGATGGACATTAATATGCGAAATATATGGTATGACATTGGTATCTTACTAGCTTGGGGGGTGCTTTACCGGCTGTTCTTCTATGTGGTTCTTAGATTTTACTCCAAGAATGAGAGGAAA 2289 44.12 MAADGRRRANKSLETLLDNDKVVAPPPQLQVKLLPGQGLEFNNLSYSVLKKFKKDGVWIKREAYLLNDISGQAMRGEIMAIMGPSGAGKSTFLDALAGRMAKGSLEGSVKIDGRPVTASYMKMVSSYVMQDDQLFPMLTVFETFMRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGRLIYVGNPFNLSAHLSGFGRPVPDDENGIEYLLDVIKEYDESNVGLEPLVLYQRHGIKPDLVAKTPVSKTPKAPYKNGLGPGPKFLNLRSQAFSMTSGPNSSQFDSAYGYDDNEDDDFDKSLERKSARTPMNSRSGVYYPPLASQFYKDLSAWVYNGVKGTPGRRPSWTPARTPGQTPGKTPISGVRSVVSSQFPSSHQTTTHAKIPSVFNMSMDSHLPSFEELDLEEVLDEPDHGPKYANPWLREVVVLSWRTMLNVIRTPELFLSREIVLTVMAIILSTMFKNLGHATFRDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAAITQFWLHLKSNLFFFWISLFASLITTNAYVMLVSALVPSYITGYAVVIATTAIFFLTCGFFLKRTQIPIYWRWLHYISAIKYPFESLLINEFKGTRCYQGNPNDLSPGPLGDVRISKLHNVSRDLQPNCMLIGEDVLFSMDINMRNIWYDIGILLAWGVLYRLFFYVVLRFYSKNERK 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9562929 9566338 - Cp4.1LG09g11180.1 Cpe09g01109 475475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01109 763 Pfam ABC transporter 66 142 IPR003439 GO:0005524
Cpe09g01109 763 PANTHER ABC TRANSPORTER 146 757 - -
Cpe09g01109 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 240 IPR027417 -
Cpe09g01109 763 ProSitePatterns ABC transporters family signature. 148 162 IPR017871 GO:0005524
Cpe09g01109 763 SMART AAA_5 75 233 IPR003593 -
Cpe09g01109 763 MobiDBLite consensus disorder prediction 320 342 - -
Cpe09g01109 763 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 248 IPR003439 GO:0005524
Cpe09g01109 763 CDD ABCG_EPDR 36 230 - -
Cpe09g01109 763 Coils Coil 758 763 - -
Cpe09g01109 763 Pfam ABC-2 type transporter 471 677 IPR013525 GO:0016020|GO:0140359
Cpe09g01109 763 Gene3D - 36 143 IPR027417 -
Cpe09g01109 763 PANTHER ABC TRANSPORTER 5 145 - -
Cpe09g01109 763 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 145 - -
Cpe09g01109 763 Gene3D - 144 244 IPR027417 -
Cpe09g01109 763 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 146 757 - -
Cpe09g01109 763 MobiDBLite consensus disorder prediction 388 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01109 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101210003 1301.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01109 Cpe-Chr9:9562929 Cpe19g00723 Cpe-Chr19:5641252 9.22E-81 dispersed
Cpe09g01109 Cpe-Chr9:9562929 Cpe03g00145 Cpe-Chr3:733348 9.42E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01109 Cpe_Chr09 FPKM 0.0 0.112032 0.0 0.059069 120.352997 106.869331 104.378769 0.0 0.0 0.0
Cpe09g01109 Cpe_Chr09 FPKM 0.013333 0.111163 0.041691 0.058611 160.739792 148.407822 149.297012 0.0 0.0 0.008238