Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe09g01112 | ATGGAGAGCTTATTAGGTCTTCTTCGTATTCGGATCATTCGCGGCGTCAACCTCGCCGTTCGCGACGTTCGCAGCAGTGATCCTTACATCGTCGTTAAATTGAATAAACAGAAATTGAAGACCCGTGTGATCAAGAAGGATGTCAATCCTGAATGGAACGAGGACCTCACTCTTTCTGTTACCGACCCCGATGTTTCAGTCAAGCTCACGGTGTACGACCACGACACGTTTACGATGGACGACAAGATGGGAGATGCGGAGTTCGAGATAGGGCCATACATCGAAGCACTGAAGATGGATTTGGCAGAGCTACCAAGTGGAACCGTGCTGTCAAGGGTGCAGCCATGCAGGCAAAATTGCTTAGCCGAGGAGAGCGCCATAGTGTGGGAGGAAGGCAAGGTTATTCAAAACATTTGCCTGCGCTTGCGAAATGTTGAATGCGGCGAAGTTGAAATCCAGTTGCAGTGGATTGAGCTTCCTGGTGCCAAAGGTTTGTAA | 498 | 49.4 | MESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKLNKQKLKTRVIKKDVNPEWNEDLTLSVTDPDVSVKLTVYDHDTFTMDDKMGDAEFEIGPYIEALKMDLAELPSGTVLSRVQPCRQNCLAEESAIVWEEGKVIQNICLRLRNVECGEVEIQLQWIELPGAKGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9578261 | 9579620 | - | Cp4.1LG09g11190.1 | Cpe09g01112 | 475478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe09g01112 | 165 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Cpe09g01112 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 1 | 164 | - | - | |
| Cpe09g01112 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 143 | IPR035892 | - | |
| Cpe09g01112 | 165 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Cpe09g01112 | 165 | Gene3D | C2 domain | 4 | 163 | IPR035892 | - | |
| Cpe09g01112 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Cpe09g01112 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
| Cpe09g01112 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00045 | Cpe-Chr1:297361 | Cpe09g01112 | Cpe-Chr9:9578261 | 3.29E-67 | dispersed | |
| Cpe01g01844 | Cpe-Chr1:15729256 | Cpe09g01112 | Cpe-Chr9:9578261 | 2.23E-72 | dispersed | |
| Cpe09g01112 | Cpe-Chr9:9578261 | Cpe10g00739 | Cpe-Chr10:4223760 | 5.28E-43 | dispersed | |
| Cpe20g00154 | Cpe-Chr20:873232 | Cpe09g01112 | Cpe-Chr9:9578261 | 3.41E-44 | transposed | |
| Cpe18g00677 | Cpe-Chr18:6805030 | Cpe09g01112 | Cpe-Chr9:9578261 | 1.55E-93 | wgd | |
| Cpe02g01454 | Cpe-Chr2:12546919 | Cpe09g01112 | Cpe-Chr9:9578261 | 2.33E-49 | wgd | |
| Cpe20g00153 | Cpe-Chr20:872328 | Cpe09g01112 | Cpe-Chr9:9578261 | 5.41E-17 | wgd | |
| Cpe04g01368 | Cpe-Chr4:11123228 | Cpe09g01112 | Cpe-Chr9:9578261 | 1.24E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe09g01112 | - | - | cmo:103502345 | 295.049 |