Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01115 ATGAACATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAATTTTTCTTCCGATTCATTCAATGCCCGGAAACTTCGACCGCTCATTCCTCGCCCTCTCTCTTCTCCCTCCACCAACGATTTCTTCTCTCAATTTTATCAAATNAGGACTGATCAGAGCAAAAGAGAGTTGAATAATGCACCACCGCCGCCGGTCGTGGTAAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTACTGGAGGAATTGTACCGCCGGGGAACTCGAACACCGTCCGCCGACCAGATTCAACATATCACCGCTCAGCTCCGCCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAGGCTAGAGAGCGGCAGAAACGCCGCCGTCAGATGGAATCTTCCGACCAGTCGATTTGCGACATTGAAATCCTCGAACGGAAAGATTCAGGGTCGGGTAGGACAGTCTATGAAGTTGAACACACCAAGAACTGGCCTACCTCTACAAACTGCCGTACACTTGTGGAGCGTAAGTTTTCATGGCTTTATGCTTACTTATGTGTTCTCGATCTTCATTTTTCTCTTAATTAG 600 48.33 MNMWMMGYNDGGDLNFSSDSFNARKLRPLIPRPLSSPSTNDFFSQFYQXRTDQSKRELNNAPPPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSDQSICDIEILERKDSGSGRTVYEVEHTKNWPTSTNCRTLVERKFSWLYAYLCVLDLHFSLN 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9602444 9603834 + Cp4.1LG09g11150.1 Cpe09g01115 475481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01115 199 Pfam Homeodomain 70 129 IPR001356 GO:0003677
Cpe09g01115 199 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 32 174 IPR044555 GO:0003700|GO:0099402
Cpe09g01115 199 SMART HOX_1 67 134 IPR001356 GO:0003677
Cpe09g01115 199 MobiDBLite consensus disorder prediction 53 72 - -
Cpe09g01115 199 CDD homeodomain 71 131 IPR001356 GO:0003677
Cpe09g01115 199 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 32 174 - -
Cpe09g01115 199 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
Cpe09g01115 199 ProSiteProfiles 'Homeobox' domain profile. 75 130 IPR001356 GO:0003677
Cpe09g01115 199 Gene3D - 68 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01115 - - - cmax:111490342 335.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01371 Cpe09g01115 CCT
Cpe09g01115 Cpe20g00149 CCT
Cpe04g01371 Cpe09g01115 ECH
Cpe09g01115 Cpe20g00149 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01115 Cpe-Chr9:9602444 Cpe16g00572 Cpe-Chr16:6512367 1.20E-29 dispersed
Cpe20g00149 Cpe-Chr20:844047 Cpe09g01115 Cpe-Chr9:9602444 6.73E-93 wgd
Cpe04g01371 Cpe-Chr4:11141487 Cpe09g01115 Cpe-Chr9:9602444 3.27E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50049 PF00046 Homeodomain 1.80E-19 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01115 Cpe_Chr09 FPKM 2.123092 1.999777 7.305461 6.698279 6.67144 4.796042 6.04806 8.027164 6.801792 7.886393