Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01115 ATGAACATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAATTTTTCTTCCGATTCATTCAATGCCCGGAAACTTCGACCGCTCATTCCTCGCCCTCTCTCTTCTCCCTCCACCAACGATTTCTTCTCTCAATTTTATCAAATNAGGACTGATCAGAGCAAAAGAGAGTTGAATAATGCACCACCGCCGCCGGTCGTGGTAAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTACTGGAGGAATTGTACCGCCGGGGAACTCGAACACCGTCCGCCGACCAGATTCAACATATCACCGCTCAGCTCCGCCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAGGCTAGAGAGCGGCAGAAACGCCGCCGTCAGATGGAATCTTCCGACCAGTCGATTTGCGACATTGAAATCCTCGAACGGAAAGATTCAGGGTCGGGTAGGACAGTCTATGAAGTTGAACACACCAAGAACTGGCCTACCTCTACAAACTGCCGTACACTTGTGGAGCGTAAGTTTTCATGGCTTTATGCTTACTTATGTGTTCTCGATCTTCATTTTTCTCTTAATTAG 600 48.33 MNMWMMGYNDGGDLNFSSDSFNARKLRPLIPRPLSSPSTNDFFSQFYQXRTDQSKRELNNAPPPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSDQSICDIEILERKDSGSGRTVYEVEHTKNWPTSTNCRTLVERKFSWLYAYLCVLDLHFSLN 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9602444 9603834 + Cp4.1LG09g11150.1 Cpe09g01115 475481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01115 199 Pfam Homeodomain 70 129 IPR001356 GO:0003677
Cpe09g01115 199 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 32 174 IPR044555 GO:0003700|GO:0099402
Cpe09g01115 199 SMART HOX_1 67 134 IPR001356 GO:0003677
Cpe09g01115 199 MobiDBLite consensus disorder prediction 53 72 - -
Cpe09g01115 199 CDD homeodomain 71 131 IPR001356 GO:0003677
Cpe09g01115 199 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 32 174 - -
Cpe09g01115 199 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
Cpe09g01115 199 ProSiteProfiles 'Homeobox' domain profile. 75 130 IPR001356 GO:0003677
Cpe09g01115 199 Gene3D - 68 130 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01371 Cpe09g01115 CCT
Cpe09g01115 Cpe20g00149 CCT
Cpe04g01371 Cpe09g01115 ECH
Cpe09g01115 Cpe20g00149 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01115 Cpe-Chr9:9602444 Cpe16g00572 Cpe-Chr16:6512367 1.20E-29 dispersed
Cpe20g00149 Cpe-Chr20:844047 Cpe09g01115 Cpe-Chr9:9602444 6.73E-93 wgd
Cpe04g01371 Cpe-Chr4:11141487 Cpe09g01115 Cpe-Chr9:9602444 3.27E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50049 PF00046 Homeodomain 1.80E-19 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01115 - - cmax:111490342 335.88