Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01121 ATGGGGAGCCTCAGCCAGCAATGTGGGATGCTGTTGATATTCATAAGCATCTTCCTAGCTGGTTTTGTGTCATTTAGCTTTGCTGCTCCTGTCATTAAACGCTTTGAGTTTAACTTCTTCAGTTTTTACTTCACAAACACAGGTGAATGGTGGAATGGAGATGTGGAAGAAGTTGAAAACGAGATGTTGAAACATGGAGGAGGGCCTAACGTTTCTGATGCCTACACCATAAATGGCTTACCAGGACCTCTATATCCTTCCTCTACCAAAGGTAAATCCAACACTTTCACTACCAAAACTTCTCATTTATACAACAGCACAAAAATCAAGAAATTTAGCTCAAAAGTACCTGAAAACCTCCCAGAAATGAAGGATACTGCGTTTGCTACGGCATTTTTGAACAAACTCCGCAGCCTTGGATCTCCTATGTACCCATGTAATGTTCCTAAAACAGTTCATAAAAGAGTTGTCATAACTATAAGCCTCAACCTTCAAGATTGCCCATCTGGGAAATCTTGCCAGGGTTTGAACGGGAAGAGCTTCTTTGCTTCTATGAACAATCAATCCTTCGTTCGTCCGGCTTTGTCCATATTGGAATCTCATTACAGAAACACGGCTACTAAGACGTACTCTTCCGATTTTCCAGAAAAACCTCCTAAGGTTTATGATTACACGGGTGCGAACCCATTGACGAACAACATGAACGCAAAATTTGGAACT 720 41.39 MGSLSQQCGMLLIFISIFLAGFVSFSFAAPVIKRFEFNFFSFYFTNTGEWWNGDVEEVENEMLKHGGGPNVSDAYTINGLPGPLYPSSTKGKSNTFTTKTSHLYNSTKIKKFSSKVPENLPEMKDTAFATAFLNKLRSLGSPMYPCNVPKTVHKRVVITISLNLQDCPSGKSCQGLNGKSFFASMNNQSFVRPALSILESHYRNTATKTYSSDFPEKPPKVYDYTGANPLTNNMNAKFGT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9636486 9639831 + Cp4.1LG09g11160.1 Cpe09g01121 475487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01121 240 Pfam Multicopper oxidase 47 99 IPR001117 -
Cpe09g01121 240 PANTHER LACCASE-1 109 240 - -
Cpe09g01121 240 PANTHER LACCASE-1 47 91 - -
Cpe09g01121 240 PANTHER MULTI-COPPER OXIDASE 109 240 IPR045087 -
Cpe09g01121 240 PANTHER MULTI-COPPER OXIDASE 47 91 IPR045087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01121 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101208781 206.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01121 Cpe-Chr9:9636486 Cpe10g00928 Cpe-Chr10:5185147 8.95E-14 dispersed
Cpe09g01121 Cpe-Chr9:9636486 Cpe01g02501 Cpe-Chr1:20573988 7.50E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00705 Chy12g01406 Cme12g01841 . . . . . Bpe15g00517 . . . . . . Cma18g00063 . Car18g00055 Cpe09g01121 . . . . . . . . Cla04g01057 Cam04g1099 Cec01g1614 Cco01g1659 Clacu04g1124 Cmu04g1108 Cre01g1408 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01121 Cpe_Chr09 FPKM 34.36211 34.818378 35.729362 35.945702 23.733467 28.308344 22.114033 57.956463 59.424667 57.667606