Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01126 ATGGCGGCAGAGCGAGAGAGGGAAAAAAAAAACGAGACTGTAAAACTTGTGTGTTATTTTCGAATGGGGAGCCCTGCACTGAATGGCCGGAATAATGGGCAGCGGTTAGGCATTACTGACCCCATTTCGTTGAGTGGACCGACGGAGGACGACGTGATAAAGACTCGCGAACTTGAAAAGTATTTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGAAGACTAGACCAGATTGTGAAGATTTGGGTTAAAGCAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTACAAGAAGCAAATGCTAAGATTTTCACATTTGGTTCATATCGTTTAGGGGTGCATGGCCCTGGTGCAGACATTGACACACTCTGTGTGGGACCTAGACATGCAACACGTGAAGAAGACTTTTTTGGTGAGTTACATAAAATGCTGTCAGAGATGCCTGAAGTATCTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTCATGAAATTTAAGTTCGCCGGGGTTTCTATTGATCTTCTCTATGCGAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATGTATCTCAGGACTCAATACTACAGAATGCAGATGAACAGACCGTTCGTAGTTTAAATGGTTGTCGAGTTACTGATCGAATCCTGCGATTAGTTCCAAATATTCAGAGTTTCCGAACAACATTGAGATGCATGAGGTTTTGGGCTAAACGCCGAGGTGTTTATTCCAATGTTTCTGGGTTCCTTGGTGGTATAAACTGGGCATTGCTCGTTGCTCGCATATGCCAACTATTCCCCAATGCATTGCCAAATATGCTTGTGTCCCGTTTTTTCAGGGTCTTCACCCAGTGGCGCTGGCCTAATCCAGTCATGCTGTGTAGTAATGAAGAAGGATCTCTTGGACTTCCAGTTTGGGATCCTAGGAGAAATCCAAAGGATAGATACCATTTAATGCCCATCATTACTCCTGCTTATCCTTGCATGAACTCTAGCTACAATGTTTCTTCAAGCACCTTGCGTATTATGACTGAAGAATTTCAGAGGGGACATGACATTTGTGAGGTTATGGAAGAAAACAAGGCTGATTGGGATACGCTTTTTGAGCCTTACCCCTTCTTCGAAGCATACAAAAACTATTTACAAATAGACATTACTGCTGAAAATGCTGATGATCTAAGAAAGTGGAAAGGTTGGGTTGAATCTCGTCTCCGCCAACTGACATTGAAGATTGAGAGACATACGTATAACAAGCTTCAGTGCCATCCACATCCAGGCGATTTTTCTGATAAATCCAAACCTTTCCACCATTGTTATTTCATGGGTTTGCAGCGAAAACAAGGAGTTCCTGCAAGTGGAGGTGAACAGTTTGATATGAGGTTGACAGTTGAGGAATTTAAACATTCTGTCAACATGTATACACTGTGGAAGCCTGGGATGGAGATATATGTATCACATGTGAAAAAGAGGAATATACCAACTTTTGTTTTCCCAGGTGGAGTCCGACCTTTGCGTGCATCAAAAGTGACATGGGATAGCAGGCGTAGTTCAGAACTAAAAGCTTCTGACAGTGCTCAAGTAGACAGGCCATTTGAAGTTGCAGAAAGTATAGATGGAGTAGATGATAGAAGGAAAAGAATGCGTCTTGATGATAATGCAAATACTAACTCGAGAAATGGAGAATGCTTGGTTGTTGTTCATTCCCACCCTGAGGAAGTTCACGAAGTCAGCCAAGTCAGCACCACTAGCTCATGTTCCATTAAGGATTTGAATTCTACTCCTACAAGTGCAAATAACTTGGAAAATCTGGCAGATGTTTCCTCTCAGAATAATGGAGATCATGGATCCATGGAAGTTGATCATTCCACAAACATTGTATCGGCAGCTGCTGATACATCAAGCTGTAAAGAAGCAGAGAAGCTGGCAATTCAAAAGATTCTGTCTGATTCATATGACTCTCACCAAGCTTTGCCTAGTGAGCTAGAAGAGCTCGACGATTTTGATTATAAAAATCAAGCTAAAGATTTTGGGGCCACTAAGCAAGGTAGCCCCTTGATGTCTTCGGTTGCCAACACATCTTCTGTGGTGCCTATGACATCTTGCAATGAAGCACGCCAGTCCTCAAGTTCATATTCCAATGGGGGCTTAGAGGAGCTCGAGCCTGCTGAGCTTGTGGCGCCATCGTCAACGGGGACCGCTCCTGCACCTGTAGCTGCCCGAAAGCCAATTATCAGGTTGAGCTTCACTTCCTTGGGCAAAGCTGGTAAAAGCTCACTGGAGCACTTGGTCGCGTGCAAGTTGCTTGTTCTTCATCACGAGCTGAGTTCAAGTGGGATGGAAACGAAACATCTTGAATATGTGTTGGTTCCGCTTGGTTTTGCGGTGCTGGTGAGCTACCATCTTTGGTTGGCAGTCACCATTTACTGGAGACCGAAAAGAACAGTCATTGGAATCAACGCCGAATCCCGCCGGCAATGGGTTTCCACCATGATTTCAGATCCCATGAAGAATGGTGTTCTTGCAGTCCAAATCATACGAAACAACATAATGGCTTCCACGCTCATGGCCACGACAACCATCACCATTGGCTCGTTGCTTAGTGCTTTTGTAAGCAGCACATCAAGTACTGGAAAGTACCATTACATTGTACTGTGTTTCCTCGTTGCATTTCTTTGCAATGTGCAGTCTATTCGATACTATGCTCATGCCAGCTTCTTAGTCACTTTGCCTGCTGGTGAAGGCAGAATGGATTATTTTGCTGGAATCTTGAACCGGGGAAGCTTATTTTGGTCACTCGGACTGCGAGCTTTCTATTTTGCAATTCCTCTCTTCCTCTGGATCTTTGGACCTCTTTCAATGTTCTTGAGTTCCTGCCTTATAACATTTGTGCTTTACTTCTTGGACTTTACTCGAACTTCCAGCTATGATCCTTATGAATATCTGCAAAAGGAAGAAGTGAACAACAATGACATTGAATCTGTTGGTCAATCAAGGGGAAACAACATCGCCGTAAGCTCCCGCCTTCACTCTCCTCTACTTGCAGCAGGTTACAGTATGACCTCCAATTGCAATGATTCTGCAGATCAAAACTGA 3126 44.05 MAAEREREKKNETVKLVCYFRMGSPALNGRNNGQRLGITDPISLSGPTEDDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKIWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLSEMPEVSELHPVPDAHVPVMKFKFAGVSIDLLYAKLSLWVIPEDLDVSQDSILQNADEQTVRSLNGCRVTDRILRLVPNIQSFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLFPNALPNMLVSRFFRVFTQWRWPNPVMLCSNEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGHDICEVMEENKADWDTLFEPYPFFEAYKNYLQIDITAENADDLRKWKGWVESRLRQLTLKIERHTYNKLQCHPHPGDFSDKSKPFHHCYFMGLQRKQGVPASGGEQFDMRLTVEEFKHSVNMYTLWKPGMEIYVSHVKKRNIPTFVFPGGVRPLRASKVTWDSRRSSELKASDSAQVDRPFEVAESIDGVDDRRKRMRLDDNANTNSRNGECLVVVHSHPEEVHEVSQVSTTSSCSIKDLNSTPTSANNLENLADVSSQNNGDHGSMEVDHSTNIVSAAADTSSCKEAEKLAIQKILSDSYDSHQALPSELEELDDFDYKNQAKDFGATKQGSPLMSSVANTSSVVPMTSCNEARQSSSSYSNGGLEELEPAELVAPSSTGTAPAPVAARKPIIRLSFTSLGKAGKSSLEHLVACKLLVLHHELSSSGMETKHLEYVLVPLGFAVLVSYHLWLAVTIYWRPKRTVIGINAESRRQWVSTMISDPMKNGVLAVQIIRNNIMASTLMATTTITIGSLLSAFVSSTSSTGKYHYIVLCFLVAFLCNVQSIRYYAHASFLVTLPAGEGRMDYFAGILNRGSLFWSLGLRAFYFAIPLFLWIFGPLSMFLSSCLITFVLYFLDFTRTSSYDPYEYLQKEEVNNNDIESVGQSRGNNIAVSSRLHSPLLAAGYSMTSNCNDSADQN 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9672902 9682352 + Cp4.1LG09g11290.1 Cpe09g01126 475492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01126 1041 Pfam Poly(A) polymerase central domain 37 381 IPR007012 GO:0004652|GO:0043631
Cpe09g01126 1041 Pfam Poly(A) polymerase predicted RNA binding domain 384 442 IPR007010 GO:0003723|GO:0043631
Cpe09g01126 1041 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 22 698 - -
Cpe09g01126 1041 Gene3D Poly(A) polymerase predicted RNA binding domain 383 498 - -
Cpe09g01126 1041 Gene3D - 37 379 - -
Cpe09g01126 1041 CDD NT_PAP_TUTase 77 231 - -
Cpe09g01126 1041 PANTHER POLY A POLYMERASE 22 698 - -
Cpe09g01126 1041 Gene3D Beta Polymerase, domain 2 69 225 IPR043519 -
Cpe09g01126 1041 MobiDBLite consensus disorder prediction 604 630 - -
Cpe09g01126 1041 Pfam Protein of unknown function, DUF599 798 982 IPR006747 -
Cpe09g01126 1041 SUPERFAMILY PAP/OAS1 substrate-binding domain 232 381 - -
Cpe09g01126 1041 SUPERFAMILY Nucleotidyltransferase 37 230 IPR043519 -
Cpe09g01126 1041 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 382 508 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cpe09g01126 1041 Pfam Nucleotidyltransferase domain 102 186 IPR002934 GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01126 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - csv:101217340 1344.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01126 Cpe20g00138 CCT
Cpe09g01126 Cpe20g00138 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01126 Cpe-Chr9:9672902 Cpe12g00645 Cpe-Chr12:6314692 0 dispersed
Cpe20g00195 Cpe-Chr20:1125507 Cpe09g01126 Cpe-Chr9:9672902 1.89E-34 dispersed
Cpe14g00003 Cpe-Chr14:22840 Cpe09g01126 Cpe-Chr9:9672902 6.99E-61 transposed
Cpe18g00691 Cpe-Chr18:6891090 Cpe09g01126 Cpe-Chr9:9672902 2.47E-54 wgd
Cpe20g00138 Cpe-Chr20:764870 Cpe09g01126 Cpe-Chr9:9672902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01126 Cpe_Chr09 FPKM 5.503902 6.744282 16.493528 17.504459 66.875793 68.819374 68.353104 18.317038 17.724154 15.773743