Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01130 ATGTCGACCTACACCGACACCGACGATGATTCGGCAGCTCCATCAAAGCTCTTCGGACGCCGCCGCCCCGTCCATGAAATTCTCGGAGGGGGAAAAGTCGCCGACATCTTGTTATGGAGAGACTCGAAGATGTCGGGTGCATTGCTGTTGGGGATGACAACGTTGTGGTTTCTGTTCGAGGTCGTTGAATACAAATTTGTGACCCTCATCTGCCACCTCTCTATCACCTCCATGCTCATCTTCTTCATTTGGTGCACTGGAGCTGAAATCTTCAAATGGAACCCTCCTCGGTTGCCTGAAGTGATATTAAAAGACTCAGCATTCAAAGAAGCAATTGTGTCTCTATATCTTTTGTCAGTGATTGGATCGTATGTGAGCTTTCTGAATCTTGTTTATTTCGGGTTTGTGGCGTTGGAAACTCTGCCATTTCTGTACGTGAAGTATGAAGAAGAGGTTGATCATTTGGCTGGGAAGGCCATTTATCACACCAAGAAATCTTACAGAAATTTCGACGCCAAGTTCCTCAACAAGATCCCCAGAGGACCTGTTAAGGACAAGAAACTCAGATAA 570 46.14 MSTYTDTDDDSAAPSKLFGRRRPVHEILGGGKVADILLWRDSKMSGALLLGMTTLWFLFEVVEYKFVTLICHLSITSMLIFFIWCTGAEIFKWNPPRLPEVILKDSAFKEAIVSLYLLSVIGSYVSFLNLVYFGFVALETLPFLYVKYEEEVDHLAGKAIYHTKKSYRNFDAKFLNKIPRGPVKDKKLR 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9698914 9700893 - Cp4.1LG09g11370.1 Cpe09g01130 475496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01130 189 PANTHER RETICULON 110 187 IPR045064 GO:0009617
Cpe09g01130 189 PANTHER RETICULON 7 112 IPR045064 GO:0009617
Cpe09g01130 189 Pfam Reticulon 33 111 IPR003388 -
Cpe09g01130 189 ProSiteProfiles Reticulon domain profile. 33 189 IPR003388 -
Cpe09g01130 189 PANTHER RETICULON-LIKE PROTEIN B9 110 187 - -
Cpe09g01130 189 PANTHER RETICULON-LIKE PROTEIN B9 7 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01130 - - - mcha:111008946 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01130 Cpe-Chr9:9698914 Cpe14g00072 Cpe-Chr14:400297 5.51E-45 dispersed
Cpe09g01130 Cpe-Chr9:9698914 Cpe13g00128 Cpe-Chr13:925518 2.57E-52 transposed
Cpe09g01130 Cpe-Chr9:9698914 Cpe05g00366 Cpe-Chr5:2062288 2.22E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g283 . . . . . . . . . Cmo18g00041 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00209 Csa01g00691 Chy12g01420 Cme12g01856 . . . . . . . . Sed01g1743 . . . Cma18g00051 . Car18g00044 Cpe09g01130 . Bhi08g01258 Tan05g2233 Cmetu10g1289 Lac10g0263 Hepe07g2374 . . Cla04g01073 Cam04g1117 Cec01g1631 Cco01g1677 Clacu04g1143 Cmu04g1124 Cre01g1425 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012074 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01130 Cpe_Chr09 FPKM 7.167924 6.949616 23.50342 21.714838 243.476974 234.246796 243.239746 18.397251 19.151049 17.806488