Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01138 ATGAGCAGAGCCGGCGGCCCAAGTGGCCGGAAGAGGGGTTTCTTCAATGGCGATGGTGCGGCCGAATTCTTCCTCCATTTAATGGTGGACAAGCCTCTTCTTCCATTTCTGATACCGTTAGTTTTGATTGCTTGGAGTATTGAGAGATGGGTCTTTTCTTTCTCTAATTGGGTTCCTCTGGCTGTGGCTGTTTGGGCAACTTTGCAGTATGGGAGTTATCAACGCCGATTAGTTGTGGATGATTTGAACACAAAATGGAGGCGACTCGTAACGAACACCTCGCCTGAAACACCTTTGGAACCCTGTGCTTGGTTGAATAAGCTGTTGATGGAAGTATGGCCAAATTATTTCAATCCAAAACTTTCCACAAAGCTTTCTTCCACAGTAAATAAACGGTTGAGGGACCGAAAGTCGAGGCTTATTGAAAAAATCGAACTGCTGGATTTTTCTCTTGGCTCATGCCCTCCTAGTTTGGGTCTTAGTGGGGCTCGATGGTCAACTTGTGGTGATGAGCTTGTGTTGATGCCTATTTTGGATGGGAGGGCAGTTTTATTTTCCTTTGTGACAACTCCTGATGTAAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAATCATTACCTGCAACAGAGCTCCCTGGTGTTTCCTCCTGGCTGGTCAAAATTTTTACAGATACCCTGGTTAGGACAATGGTCGAACCACGCAGGCGTTGTTTCTCGTTGCCATCTGTTGATCTTAGGAAAAAAGCTGTTGGTGGTATTATATATGCAACAGTCGTTTCTGCCAGAAAACTTTATAGAAGTAGTTTGAAGGGAAGCCCAACCAGAAGGCAACAAAGTTACTCTGCTAATGGTTCATTCGTAGAGCAGTTTACTGATAAAGATATGCAGACATTTGTTGAGGTTGAACTTGAAAAGCTTAGTAGAAAAACAGAAGCAAGATCAGGTTCAGACCCTCAGTGGAATACGACATTCAATATGATTTTACATGAAGATACAGGAACTCTACGGTTTCATCTTTATGAGTATCGACCAAGTCATGTGAAGCATGATTATCTAGCAAGTTGTGAGGTTAAGATGAAATATGCTGCAGATGATTCCACTACATTTTGGGCAATAGGACCAGATTCCAGTGTAATAGCCAAGCATGCTGACTTTTGTGGAAAAGAAGTTGAAATGGTCATTCCATTTGAAGGAGCCCATTCTGGGGAGCTGACAGTAAAGCTTGTTTTAAAGGAATGGATGTTCTCAGATGGTTCACATAGTTCTAACAGGTATCATGTTAGTCCACAACAATCTCTCGATGGGGCGTCGAGTTTTCTTTCTAGCACTGGAAGAAAAATTTACATCACAGTTGTGGAAGGGAAGGATCTACCCACAAAAGACAAGAATGGAAAGTGTGATCCGTATGTCAAATTGCAGTATGGAAAGGCTCTCCAGCGCACAAGAACTGCTCACTCCTTCAATCCAATATGGAATCAGAAGTTTGAATTTGATGAGATAGCTGGTGGTGAACATCTTAAGTTAAAATGCCTTACAGAAGACATTTTCGGGAACGATAACACCGGTAGCGCGAGGGTAAATCTAGAAGGATTAGCAGAAGGGTCAGTTAGAGATGTATGGATTCCTCTTGAAAAGGTGAATTCTGGAGAATTAAGGCTTCAAATAGAAGCCATCAGAATGGATGACAATGAAGGATCTAAGGGCTCAAGCTTGGGTCCAACAAATGGTTGGATTGAGCTTGTTCTAATTGAAGCAAAAGACCTTGTTGCTGCGGATATCAGAGGGACAAGTGATCCTTATGTGAGAGTCCAATATGGAAAGTTGAAGAAAAGAACCAAGGTTATGTACAAAACCCTGAGTCCCAAGTGGAATCAGATTTTGGAGTTTCCTGACAATGGCAGCCCATTGTTGTTACATGTCAAAGACCACAATGCTCTGCTCCCCACATCAAGCATAGGTGATTGTGTTGTGGAATATCAAGGGCTACCCCCAAACCAGATGTTTGACAAATGGATACCACTTCAGGGTGTCAAAAAGGGAGAGATACATATCCAAATCACCAAGAGAGTTCCAGAACTAGAGAAGAGAACTAGTTTGGATTCAAGAACCAGTCTGGATTCTGAAATTCCCTTGAGGAGAGCACATCAGATTTCCAGTCAGATGAAACAGATGATGAATAAGTTACAAAGTTTCATTGAAGACAGTAATCTTGAAGAAATTTCAACAACTGTGAGTGAGCTGGAAAGTCTAGAGGATCTGCAAGAAGAGTATATGGTACAGCTTGAAACAGAACAAATGCTTTTAATAAACAAGATTAAGGAACTTGGTCAGGAGTTTCTCAACTCATCCCCTTCCTTAAGCAGAAGATCATCTGGATACTAA 2385 42.1 MSRAGGPSGRKRGFFNGDGAAEFFLHLMVDKPLLPFLIPLVLIAWSIERWVFSFSNWVPLAVAVWATLQYGSYQRRLVVDDLNTKWRRLVTNTSPETPLEPCAWLNKLLMEVWPNYFNPKLSTKLSSTVNKRLRDRKSRLIEKIELLDFSLGSCPPSLGLSGARWSTCGDELVLMPILDGRAVLFSFVTTPDVRIGVAFGSGGSQSLPATELPGVSSWLVKIFTDTLVRTMVEPRRRCFSLPSVDLRKKAVGGIIYATVVSARKLYRSSLKGSPTRRQQSYSANGSFVEQFTDKDMQTFVEVELEKLSRKTEARSGSDPQWNTTFNMILHEDTGTLRFHLYEYRPSHVKHDYLASCEVKMKYAADDSTTFWAIGPDSSVIAKHADFCGKEVEMVIPFEGAHSGELTVKLVLKEWMFSDGSHSSNRYHVSPQQSLDGASSFLSSTGRKIYITVVEGKDLPTKDKNGKCDPYVKLQYGKALQRTRTAHSFNPIWNQKFEFDEIAGGEHLKLKCLTEDIFGNDNTGSARVNLEGLAEGSVRDVWIPLEKVNSGELRLQIEAIRMDDNEGSKGSSLGPTNGWIELVLIEAKDLVAADIRGTSDPYVRVQYGKLKKRTKVMYKTLSPKWNQILEFPDNGSPLLLHVKDHNALLPTSSIGDCVVEYQGLPPNQMFDKWIPLQGVKKGEIHIQITKRVPELEKRTSLDSRTSLDSEIPLRRAHQISSQMKQMMNKLQSFIEDSNLEEISTTVSELESLEDLQEEYMVQLETEQMLLINKIKELGQEFLNSSPSLSRRSSGY 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9741524 9747314 + Cp4.1LG09g11450.1 Cpe09g01138 475504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01138 794 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 446 558 IPR035892 -
Cpe09g01138 794 PANTHER OS01G0128800 PROTEIN 11 173 - -
Cpe09g01138 794 PANTHER OS01G0128800 PROTEIN 171 792 - -
Cpe09g01138 794 ProSiteProfiles C2 domain profile. 560 673 IPR000008 -
Cpe09g01138 794 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 247 364 IPR035892 -
Cpe09g01138 794 Coils Coil 759 779 - -
Cpe09g01138 794 Pfam C2 domain 255 362 IPR000008 -
Cpe09g01138 794 Pfam C2 domain 579 675 IPR000008 -
Cpe09g01138 794 Pfam C2 domain 447 544 IPR000008 -
Cpe09g01138 794 Gene3D C2 domain 252 393 IPR035892 -
Cpe09g01138 794 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 571 688 IPR035892 -
Cpe09g01138 794 CDD C2 579 675 - -
Cpe09g01138 794 CDD C2 448 544 - -
Cpe09g01138 794 Gene3D C2 domain 562 690 IPR035892 -
Cpe09g01138 794 Gene3D C2 domain 424 561 IPR035892 -
Cpe09g01138 794 ProSiteProfiles C2 domain profile. 429 542 IPR000008 -
Cpe09g01138 794 SMART C2_3c 254 372 IPR000008 -
Cpe09g01138 794 SMART C2_3c 578 672 IPR000008 -
Cpe09g01138 794 SMART C2_3c 447 541 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01138 - - - csv:101213500 1431.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01138 Cpe20g00121 CCT
Cpe09g01138 Cpe20g00121 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01138 Cpe-Chr9:9741524 Cpe06g00325 Cpe-Chr6:1797810 4.24E-06 dispersed
Cpe18g00761 Cpe-Chr18:7295754 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
Cpe20g00121 Cpe-Chr20:671208 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
Cpe04g01403 Cpe-Chr4:11314103 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01138 Cpe_Chr09 FPKM 60.836895 67.219238 70.003899 68.740051 11.772264 11.719869 9.737226 24.379356 22.608974 23.297073