Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01146 ATGGTTAAAAAAAAAAAAGTATTTTTTTTCCTGAATGAATTCATAGGAAATATGTTAATTGTTGTATTCATTTCAAATAATCATATCAAATGTGCACTAAATCATCACCTCAATCCTTCTTCTTCTTCTTCTTCTTCTTCATTCGCCTCTTGGTGTCATACTCTTTGTTCCAGTCATCCAGAGCTAGTGACGATGGCGATGAAGATGGCCGCCATCAGAGCTTCCGCCATTCCCAGACATCACCCTCCTCCTTCTTCCCCGTCACTTCATTCTTCCTCTCACAGATCCGATTCCAAATCCCAATTCCGTCCCATCTCCGTCGCCTTACCGGCCTCCACTACCCTCTCTCTGTTAGCCCTTTTTTCTCCTCAGTACGAAGCTAGGGCTCTCAGCAAAGACCAAATCATCTCGTCTCTCGACAATGTGGAGAAGACGTTTGATCAGGTTCAAGAAATGGGTTCGAATTTCTTTGATATTGCACAACAGGTCATTGACTCTGCTACAAATATTTTGAAGCCAGGCGTCGATGCGGCGCTGCCGATCGTGAAGCAGGCTGGAGAAGAGGCGTTGAAGGTTGCTTCTCCAACAATTTCCGAAGCTTCGAAGAAAGCCCTAGAAGCACTTGAGGGCTCTGGCATTGACACCGAGCCTGTTCTAAGTGCTGCTAAGATTATAGCTCAGAATCAACGTCCAGAAAGTATTCTTTTCTCCTTCAAATCATATTCGCCCACCAAATATTTTCCTTGGTTGCAGACAGTTGTAGGTGCCGCTCAACAAACCGGTAAGGTCATTGAAGGTGCCACGCCTTTAGCCTCATCGACTGTCGAGAAGTTCTCTGCAGCCGACCCTCTCCTAATTGCAGAAGTTGCCGGAGTCTTAGCCTTGGCGTACCTGCTTTTTCCTCCAATATGGTCTGCCATCTCTTTCAGCTTTCGTGGTTACAAAGGTGAACTCTCTCCTGCTCAAACACTCGATCTAATTTCGTCGAGTAATTACTTTCTAATCGATATACGATCCGAGAAGGAGAAGGATAAGTCTGGCATTCCTCGCCTTCCTTCTAGTGTTAAGAACCAGTCAATTGCCATTCCTTTGGAAGAATTACCAAGCAAGTTGCGGGGCATTGTCCGAAATGTAAAGAAACTAGAAGCTGAACTTTCAGCCATCAAAATTTCATATCTCAAGAAACTCAACAAAGGCTCCAACATAGTGATCTTGGGATCATACTCAGACTCAGCAAAAGCGGTTGCAAAAGCACTCACTGCCCTTGGCTTCAAGAACTCCTGGATTGTAACCGATGGGTTTTTAGGTAGCAAAGGTTGGTTAAAGAGCCAGTTAGGAACAGATACATATAAGTTTTCATTGGCGGAGATCCTTTCGCCATCCCGAGTCATCCCAGCAGGTACCAAACGTTTCGGGACGACCTCACTGACATCGGCATCTAGTAAAAAATTGCTTCCTGGTGCCGATTAA 1470 44.97 MVKKKKVFFFLNEFIGNMLIVVFISNNHIKCALNHHLNPSSSSSSSSFASWCHTLCSSHPELVTMAMKMAAIRASAIPRHHPPPSSPSLHSSSHRSDSKSQFRPISVALPASTTLSLLALFSPQYEARALSKDQIISSLDNVEKTFDQVQEMGSNFFDIAQQVIDSATNILKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALEGSGIDTEPVLSAAKIIAQNQRPESILFSFKSYSPTKYFPWLQTVVGAAQQTGKVIEGATPLASSTVEKFSAADPLLIAEVAGVLALAYLLFPPIWSAISFSFRGYKGELSPAQTLDLISSSNYFLIDIRSEKEKDKSGIPRLPSSVKNQSIAIPLEELPSKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTALGFKNSWIVTDGFLGSKGWLKSQLGTDTYKFSLAEILSPSRVIPAGTKRFGTTSLTSASSKKLLPGAD 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9779525 9793166 - Cp4.1LG09g11590.1 Cpe09g01146 475512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01146 489 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 71 487 IPR044690 GO:0009704|GO:0071277|GO:0090333
Cpe09g01146 489 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 317 436 IPR036873 -
Cpe09g01146 489 Gene3D - 315 454 IPR036873 -
Cpe09g01146 489 MobiDBLite consensus disorder prediction 77 98 - -
Cpe09g01146 489 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 71 487 - -
Cpe09g01146 489 SMART rhod_4 318 446 IPR001763 -
Cpe09g01146 489 CDD RHOD 322 436 - -
Cpe09g01146 489 ProSiteProfiles Rhodanese domain profile. 328 449 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01146 - - - cpep:111801706 681.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00071 Cpe-Chr7:344313 Cpe09g01146 Cpe-Chr9:9779525 2.26E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00306 . 59 348 Sulfurtransferasese/Rhodanese AT1G79230 66.4 2.5e-128 455.7
Cpe01g00460 . 59 334 Sulfurtransferasese/Rhodanese AT1G79230 64.4 1.6e-119 426.4
Cpe01g00460 . 59 299 Sulfurtransferasese/Rhodanese AT1G16460 72.6 4.3e-102 368.2
Cpe14g00306 . 59 295 Sulfurtransferasese/Rhodanese AT1G16460 64.9 2.7e-96 349.0
Cpe09g01146 . 103 407 Sulfurtransferasese/Rhodanese AT5G23060 52.1 3.3e-69 259.2
Cpe08g00585 CST 1 365 Sulfurtransferasese/Rhodanese AT4G01050 55.6 3.1e-101 366.3
Cpe01g00960 . 91 450 Sulfurtransferasese/Rhodanese AT2G40760 75.0 1.8e-156 549.7
Cpe04g00046 . 91 437 Sulfurtransferasese/Rhodanese AT1G17850 67.4 3.9e-148 521.9
Cpe10g01154 . 61 180 Sulfurtransferasese/Rhodanese AT2G42220 69.2 1.2e-44 177.2
Cpe03g00053 . 238 418 Sulfurtransferasese/Rhodanese AT3G08920 64.1 1.0e-66 250.4
Cpe18g00873 CCT 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.3 6.5e-112 401.0
Cpe05g00472 . 67 301 Sulfurtransferasese/Rhodanese AT5G19370 62.3 8.0e-81 297.7
Cpe14g00720 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 71.6 2.0e-147 519.2
Cpe14g00024 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 7.3e-79 290.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01146 Cpe_Chr09 FPKM 6.567915 7.876479 5.393264 6.302 1.857791 1.675719 2.496013 4.557754 4.924186 5.45905