Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01150 ATGGCTTCCCTCCTCTCTTCTGCTTTCTTCCTCCTCTTTCTGTTCTTTCACTTCTTCTCTGCAACTTGCTCTGAGTTCCTCGTCGGTGATGAACATGGGTGGGCTGTCCCTCAGCATAAACACGCTGATAGATACAATAAATGGGCCTCCCATAACAGATTCAACGTTGATGACGCCCTCCATTTCAAGTTCGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCGAAGCCTCTGTTGTACAACAACAATGGCGACGCAGTGGTGAGACTCGAGAGAGCAGGGCTGTTCTATTTCATAAGTGGAGTTTCAGGGCACTGTGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCGCTCAGCCCTCCGCAGCCACCCACTGCTCCGCCCCAAAACAACACTACCCCACTCTCTGTTTCATCTCCAATGCTTGCACTTTTCTTCACGTTCTTTGTTTCCTTTCTGTTCATTTGA 498 47.99 MASLLSSAFFLLFLFFHFFSATCSEFLVGDEHGWAVPQHKHADRYNKWASHNRFNVDDALHFKFEKDSVMEVTEEEYKQCLSSKPLLYNNNGDAVVRLERAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQNNTTPLSVSSPMLALFFTFFVSFLFI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9813614 9814183 - Cp4.1LG09g11710.1 Cpe09g01150 475516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01150 165 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 156 - -
Cpe09g01150 165 CDD OsENODL1_like 25 125 IPR041846 -
Cpe09g01150 165 Gene3D - 23 128 IPR008972 -
Cpe09g01150 165 PANTHER BLUE COPPER PROTEIN 9 156 IPR039391 GO:0009055
Cpe09g01150 165 Pfam Plastocyanin-like domain 34 118 IPR003245 GO:0009055
Cpe09g01150 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Cpe09g01150 165 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01150 - - - cmo:103495780 195.667
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01150 Cpe-Chr9:9813614 Cpe20g00102 Cpe-Chr20:543297 1.07E-62 dispersed
Cpe09g01150 Cpe-Chr9:9813614 Cpe17g00141 Cpe-Chr17:880581 1.90E-18 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe07g00325 . 1 164 Phytocyanin Superfamily AT5G25090 53.4 9.8e-37 150.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe16g00842 CCT 83 283 Phytocyanin Superfamily AT1G08500 59.4 5.7e-63 238.0
Cpe18g00130 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01150 Cpe_Chr09 FPKM 36.51157 38.233391 15.377231 17.081743 22.037006 17.328262 19.5961 10.758691 10.317021 11.39837