Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01155 ATGGGGAGAGGGAGAGTTGAGTTGAAGCGAATTGAGAACAAAATTAACAGGCAGGTTACTTTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCCGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTGGTGGCTCTAGCATGACTAAGACGCTCGAGAAGTATCGAAGGTGTAGTTATGACATACGGGATGGTGCCCGCCACCTAAATAACAATGGGCAGCCACAGAGCTTTGATGATTACTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAGAGAAACCTTTTGGGGGAAGATTTAGGACCGCTGAATGCCAAGGAACTTGAGCAACTTGAGCATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACGAACCCTAATGGACCAGCTTGCAGAACTTCAACGCAAGGAGCATATGCTTGTTGAAGACAACCGAAGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCGCAAGTAGCGGCAGCCTCCGCGGCGTGGGGCTGGGAAGGCGGCGCGGGAGGACACAGCATGGACTATTCCAGCCGCATTGCTTCACAATCAGACGCCTTTTTCTACCCCATAACCCAACCCATTCCCACTTTACAAATTGGGTACAATTCTGTTGGCTCAGTTGGATTGAGTAATAATAATACTCATAATAATAATACTAATGCTGGAGCTCCACCCCAAAATGGCAATGGATTTCAGCTTGGATGGATGCTTTAA 789 46.13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSGGSSMTKTLEKYRRCSYDIRDGARHLNNNGQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMDQLAELQRKEHMLVEDNRSLRKKLEESSAQVAAASAAWGWEGGAGGHSMDYSSRIASQSDAFFYPITQPIPTLQIGYNSVGSVGLSNNNTHNNNTNAGAPPQNGNGFQLGWML 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9833003 9835971 + Cp4.1LG09g11420.1 Cpe09g01155 475521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01155 262 Coils Coil 152 186 - -
Cpe09g01155 262 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Cpe09g01155 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe09g01155 262 Coils Coil 123 146 - -
Cpe09g01155 262 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe09g01155 262 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe09g01155 262 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Cpe09g01155 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 233 - -
Cpe09g01155 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Cpe09g01155 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe09g01155 262 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01155 Cpe20g00089 CCT
Cpe09g01155 Cpe20g00089 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01155 Cpe-Chr9:9833003 Cpe17g01070 Cpe-Chr17:8101437 2.75E-83 dispersed
Cpe09g01155 Cpe-Chr9:9833003 Cpe09g01156 Cpe-Chr9:9836724 4.78E-53 tandem
Cpe02g01396 Cpe-Chr2:12203422 Cpe09g01155 Cpe-Chr9:9833003 1.30E-59 wgd
Cpe20g00089 Cpe-Chr20:477882 Cpe09g01155 Cpe-Chr9:9833003 4.11E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50052 PF01486 K-box 2.00E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01155 K09264 - csv:101204197 369.392