Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe09g01156 | ATGGGACGAGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCATGCATGGAGAAAATCCTGGAGCGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCCAATGGAAATTGGAGTCTTGAACATGCAAAGCTCAAAGCCAGAGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGGCTCTAAAAGAGCTTCAAAATATTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCACAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCCGAGCAGCAGCAGCAACAGGAGTATAGCCATGGCGTTTCCCCGCTTCTCCTACCTCAGCCATTCCCATCTCTTGCCATGACCACGACTTGCCAGTACCCATCCCACAGCTCGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCCGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA | 750 | 46.4 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELHKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQQQQQEYSHGVSPLLLPQPFPSLAMTTTCQYPSHSSRDKDVAANYDRSAALLPPWMLGHHLGD | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9836724 | 9839583 | + | Cp4.1LG09g11490.1 | Cpe09g01156 | 475522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe09g01156 | 249 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | MobiDBLite | consensus disorder prediction | 174 | 201 | - | - | |
Cpe09g01156 | 249 | MobiDBLite | consensus disorder prediction | 181 | 197 | - | - | |
Cpe09g01156 | 249 | Pfam | K-box region | 85 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe09g01156 | 249 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe09g01156 | 249 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | Coils | Coil | 122 | 149 | - | - | |
Cpe09g01156 | 249 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe09g01156 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 216 | - | - | |
Cpe09g01156 | 249 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 216 | - | - | |
Cpe09g01156 | 249 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe09g01156 | 249 | Coils | Coil | 158 | 181 | - | - | |
Cpe09g01156 | 249 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01396 | Cpe-Chr2:12203422 | Cpe09g01156 | Cpe-Chr9:9836724 | 1.69E-80 | dispersed | |
Cpe03g00969 | Cpe-Chr3:7585925 | Cpe09g01156 | Cpe-Chr9:9836724 | 6.27E-84 | dispersed | |
Cpe07g00093 | Cpe-Chr7:459230 | Cpe09g01156 | Cpe-Chr9:9836724 | 3.20E-25 | dispersed | |
Cpe09g00955 | Cpe-Chr9:8552925 | Cpe09g01156 | Cpe-Chr9:9836724 | 1.58E-10 | dispersed | |
Cpe09g01156 | Cpe-Chr9:9836724 | Cpe20g00089 | Cpe-Chr20:477882 | 1.03E-124 | dispersed | |
Cpe09g01155 | Cpe-Chr9:9833003 | Cpe09g01156 | Cpe-Chr9:9836724 | 4.78E-53 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50053 | PF01486 | K-box | 2.20E-29 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe09g01156 | K09264 | - | csv:101207225 | 364.77 |