Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01156 ATGGGACGAGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCATGCATGGAGAAAATCCTGGAGCGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCCAATGGAAATTGGAGTCTTGAACATGCAAAGCTCAAAGCCAGAGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGGCTCTAAAAGAGCTTCAAAATATTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCACAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCCGAGCAGCAGCAGCAACAGGAGTATAGCCATGGCGTTTCCCCGCTTCTCCTACCTCAGCCATTCCCATCTCTTGCCATGACCACGACTTGCCAGTACCCATCCCACAGCTCGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCCGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA 750 46.4 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELHKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQQQQQEYSHGVSPLLLPQPFPSLAMTTTCQYPSHSSRDKDVAANYDRSAALLPPWMLGHHLGD 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9836724 9839583 + Cp4.1LG09g11490.1 Cpe09g01156 475522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01156 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 MobiDBLite consensus disorder prediction 174 201 - -
Cpe09g01156 249 MobiDBLite consensus disorder prediction 181 197 - -
Cpe09g01156 249 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe09g01156 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe09g01156 249 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cpe09g01156 249 Coils Coil 122 149 - -
Cpe09g01156 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe09g01156 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cpe09g01156 249 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 216 - -
Cpe09g01156 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Cpe09g01156 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe09g01156 249 Coils Coil 158 181 - -
Cpe09g01156 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01396 Cpe-Chr2:12203422 Cpe09g01156 Cpe-Chr9:9836724 1.69E-80 dispersed
Cpe03g00969 Cpe-Chr3:7585925 Cpe09g01156 Cpe-Chr9:9836724 6.27E-84 dispersed
Cpe07g00093 Cpe-Chr7:459230 Cpe09g01156 Cpe-Chr9:9836724 3.20E-25 dispersed
Cpe09g00955 Cpe-Chr9:8552925 Cpe09g01156 Cpe-Chr9:9836724 1.58E-10 dispersed
Cpe09g01156 Cpe-Chr9:9836724 Cpe20g00089 Cpe-Chr20:477882 1.03E-124 dispersed
Cpe09g01155 Cpe-Chr9:9833003 Cpe09g01156 Cpe-Chr9:9836724 4.78E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50053 PF01486 K-box 2.20E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01156 K09264 - csv:101207225 364.77