Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe09g01165 ATGAGGGGCATGGGAAGCCAGAGAGTTCCGCTGCTTGATCGTGGGGGAGGGCGAAAGGGGCTTGACACATCAGAAGATCGTCAGTTAACAGACCTGGAACATGGGGATGCTGTACCGCCTGCAAATGTGGGATTTGGCAGAGTACTTTCACTTGCAAAGCCTGAAGCGGGGAAATTGATAATTGCTACCATTGCTCTTCTGATTGCTTCCACGTCAAGTTTATTGATACCAAAATTTGGGGGAAAGATCATTGACATTGTATCTGGAGATATTGACACACCTGAACAGAAAAGCAAAGCTCTAAAGGAAGTCACAAACACCATTGTATACATCACATCGATCGTCTTAGTTGGTTCGGTGTGCTCAGCTATTCGAGCTTGGTTATTTTCTTCTGCTAGTGAGAGGGTTGTTGCTCGCTTAAGGAAGAATCTGTTCACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGACATTACTCGAACAGGAGAACTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAGTGCCGCAACTACCAATCTTTCCGAGGCCCTAAGAAATCTATCAACTGCATTAATCGGGCTGACCTTCATGTTTTCAACTTCTTGGAAGTTGACATTATTGGCTTTGGTTGTTGTTCCTGTCATTTCTGTTGCTGTTCGTAAATTTGGTCGCTATCTTCGTGAGCTTTCTCACAAGACACAAGCAGCTGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCCATACGCACTGTCAGATCTTTTGCTCAAGAATCGTACGAGATATCCCGGTACTCTCAGAAAGTCGAGGAGACATTGGAACTTGGACTCAAACAAGCTAAAGTGGTTGGATTGTTTTCTGGAGGTCTCTATGCAGCATCGACCTTATCTGTTATTATTGTTGTGATATATGGAGCTAATTTGACGATCAAAGGGTTCATGACTCCGGGAGCTCTGACATCTTTCATTCTTTATAGTTTAACAGTGGGAACCTCTGTATCTGGGTTGTCGGGATTATACACTGTGGCCATGAAAGCTGCTGGAGCTAGCAGGCGAGTTTTTCAGCTCCTGGATCGTGTATCAACAATGACAAATTCAGGAAATAAGTGTCCTATTGGACAACAAAGAAGGCTATCACTAGGACTTTTGGAAGTCCTGGACTATTCCCCATATTCTAGTTCCAGCATAACTTCATCTAGTATTGGCAAGGAGACTGGTAAAAATTGCACACATTTATTAAGTAACGATCCCATGCTCATCACCTCGAGACGAGACGAGACGAGATTAGATGGTTCTTTAATGGCAGTTAGTGTTAGTGATCAAGATGGAGAAGTTGAGTTGGACGATGTCTGGTTTGCATATCCTTCCCGCCCTAATCACACTGTGCTGAAGGGAATAACATTGAGATTGCAGCCTGGCTCAAAAGTAGCTCTCGTTGGTCCAAGTGGCGGTGGAAAAACCACCATAGCAAACCTGATTGAAAGATTCTATGATCCTAATAAAGGCCAGATTCTGATAAATGGGGTTCCTCTGGCAGAGATATCCCATGAACATTTGCACAAAAGGAAAATGGCGAATGCACACGATTTCATATCAAACTTCCCTGAAAAGTATAAAACCCATGTTGGCGAACGTGGAGTAAGGCTGTCGGGCGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCTCTTCTTATGAATCCAAGAATTCTCCTTTTGGATGAAGCCACAAGTGCTCTAGATGCTGAAAGTGAACACTTAGTACAGGATGCAATGGATTCTTTGATGAAAGGCAGGACCGTGCTCGTCATTGCGCATAGGCTATCCACCGTTAAGACAGCAGACACGGTGGCCGTTGTTTCTGGTGGTCAGATTGTTGAAAGCGGAACACACGAAGAGCTCCTTAGCAGGGATGGTGTCTACACTGCACTAGTGAGGAGGCAACTGCAAGATACAAAAACAACATAA 1980 44.04 MRGMGSQRVPLLDRGGGRKGLDTSEDRQLTDLEHGDAVPPANVGFGRVLSLAKPEAGKLIIATIALLIASTSSLLIPKFGGKIIDIVSGDIDTPEQKSKALKEVTNTIVYITSIVLVGSVCSAIRAWLFSSASERVVARLRKNLFTHLLNQEIAFFDITRTGELLSRLSEDTQIIKSAATTNLSEALRNLSTALIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRYLRELSHKTQAAAAVCASIAEESFGAIRTVRSFAQESYEISRYSQKVEETLELGLKQAKVVGLFSGGLYAASTLSVIIVVIYGANLTIKGFMTPGALTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGQQRRLSLGLLEVLDYSPYSSSSITSSSIGKETGKNCTHLLSNDPMLITSRRDETRLDGSLMAVSVSDQDGEVELDDVWFAYPSRPNHTVLKGITLRLQPGSKVALVGPSGGGKTTIANLIERFYDPNKGQILINGVPLAEISHEHLHKRKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVVSGGQIVESGTHEELLSRDGVYTALVRRQLQDTKTT 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9879263 9884339 - Cp4.1LG09g11630.1 Cpe09g01165 475531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe09g01165 659 MobiDBLite consensus disorder prediction 18 33 - -
Cpe09g01165 659 CDD ABC_6TM_AtABCB27_like 62 358 - -
Cpe09g01165 659 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 440 527 IPR039421 -
Cpe09g01165 659 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 528 656 - -
Cpe09g01165 659 MobiDBLite consensus disorder prediction 1 35 - -
Cpe09g01165 659 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 378 IPR039421 -
Cpe09g01165 659 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 528 656 IPR039421 -
Cpe09g01165 659 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g01165 659 Pfam ABC transporter 468 527 IPR003439 GO:0005524
Cpe09g01165 659 Pfam ABC transporter transmembrane region 59 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe09g01165 659 Gene3D ABC transporter type 1, transmembrane domain 39 365 IPR036640 GO:0005524|GO:0016021
Cpe09g01165 659 SUPERFAMILY ABC transporter transmembrane region 47 363 IPR036640 GO:0005524|GO:0016021
Cpe09g01165 659 SMART AAA_5 477 634 IPR003593 -
Cpe09g01165 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 450 651 IPR003439 GO:0005524
Cpe09g01165 659 Gene3D - 528 653 IPR027417 -
Cpe09g01165 659 Gene3D - 444 524 IPR027417 -
Cpe09g01165 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 652 IPR027417 -
Cpe09g01165 659 Pfam ABC transporter 531 582 IPR003439 GO:0005524
Cpe09g01165 659 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 440 527 - -
Cpe09g01165 659 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 378 - -
Cpe09g01165 659 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe09g01165 - - - cmax:111495393 966.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01165 Cpe-Chr9:9879263 Cpe13g00944 Cpe-Chr13:7948987 1.91E-14 dispersed
Cpe18g00261 Cpe-Chr18:4253303 Cpe09g01165 Cpe-Chr9:9879263 8.01E-13 transposed
Cpe20g00083 Cpe-Chr20:433845 Cpe09g01165 Cpe-Chr9:9879263 4.87E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe09g01165 Cpe_Chr09 FPKM 9.425287 9.974936 11.295149 12.483503 13.39577 12.862283 13.965681 7.654289 8.198478 7.328084