Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00027 ATGGGGAAGAAGAAGAAGAGGGTGTCGTCTAAGGTATGGTGCTATTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCACAAGGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCGACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCCGATGTCTTGGCAGCACACTATGGCGAGGACGAAGAAGAGTCCTTATCAAAGGTGGCCAAAGTGGAGATGCCACCGACTCAGATGGTTGGAGGTGTGGTGCCCGGATCGCTGGGCATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATTCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGCCTGGCCGGTTCCACCTCGTCCCCAACCTTGGTTCCCTCCAAATTCAGCCGTTTCAATTTCGGCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCTCACTTCCAGTATCATCAACTCCTATGCTCCAGTCTTCACAAATAACACATCCTGGATTGACTTCAACCACACCTTCAGTTTCTGTATCTCAGCCGTTGTTCCCTGTTGTTAATAATAACCACGGACCTACTCAAAGCTCTCCTTTTCCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCAGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACTAACTCCTTTTCTACTATCAGCAATCAGGTTCCAAATGTTCCAGGTGGAATATTAAGCAATTCACACTCCTATGCCTCGGGACCAAATACGGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCAAATAAGGCTCCTACTCAGCCATCAACAAACGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACCAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCACATTTTAATTGA 1128 47.16 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEDEEESLSKVAKVEMPPTQMVGGVVPGSLGIVYPPQPGLAAIQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSISAPAPLGYAQQPLFPVQTARPSLPVSSTPMLQSSQITHPGLTSTTPSVSVSQPLFPVVNNNHGPTQSSPFPSSTLSTSIPLTSAADIKGSVTHLGTNSFSTISNQVPNVPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPHFN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 177785 183013 + Cp4.1LG10g06830.1 Cpe10g00027 475564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00027 375 Gene3D Classic Zinc Finger 1 66 - -
Cpe10g00027 375 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cpe10g00027 375 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cpe10g00027 375 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cpe10g00027 375 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 371 - -
Cpe10g00027 375 SMART c2h2final6 36 59 IPR013087 -
Cpe10g00027 375 SMART c2h2final6 12 35 IPR013087 -
Cpe10g00027 375 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00027 Cpe-Chr10:177785 Cpe19g01196 Cpe-Chr19:8034558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50059 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00027 - - csv:101206973 665.996