Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00039 ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACGCTTTGATTATATCGTCAACGCTATTCAACTCCGTCGCGCCGGAAGCGGTTTCCGAAAGTGGACTTCAGCGGACAGCAGCTCCCTTGTCAACGTCACTTGGATCACCTACTGCAACGAATACAGGCTTCAAAAGCACTTCTCGCACAGACAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCCGTCTTCTTCCCCGAGAGTTATTATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAATATAAAGAAAAGAAGGAGAGTGCAAGTGAGAATGAGGTTCAAGATGTACCTTCAAGTGCGACAAAACAGAAAGTGGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGCTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACCGAGTACATGCGTCTTCGTAGACATAAAATGGGTGTTGATGACTTTGAACTTTTGACAATTATAGGAAGGGGGGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAGTCTGAGATGCTTCGCAGGGGACAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAGGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACTCTGTTAATGCGCAAGGACATTTTGACGGAGGATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGGCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGCAGTTTCCCTAATCTCACCGAGCAAGAAAATATAGTGGGGAACAATGTCAGATCTCCTGATAGTCAAAATAGTGTGTCGAAACGAACACAACAAGAGCAATTGTTACATTGGCAAAAGAACAGACGAACGTTGGCTTATTCTGCTGTTGGAACGCCGGACTATATTGCACCAGAAGTGTTATTGAGGAAAGGATATGGAATTGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACTTGTAGAAAGATCATTAACTGGAGAACTCATTTGAGATTCCCAAAAGAAGCAAAACTTTCCTTTGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGAATTGGAACCAAAGGAGCTATAGAAATTAAGGCGCATCCATGGTTTAAAGGGATACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCAGAGATCCATGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGTCCTTTGAGAAAGGCAACTTTTGTTGTTCAGCAGAAGCTTTCACCCAAGGATGTAAACTTTGTTGGCTATACGTACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGACGAGGAAAAAGCTTAACAAGACCAAGAGACCATCTGTTACAACTCTATTCGCCACAGCAGATTCTTCAGAGCAGCCTGTTCAAAGAAGTTTTCCTAATCATTTGCCAACCCATCTCGAAGTCTCGGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAACAGCAGAAGCGATGGGGAAAATGA 2064 43.41 MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVRFDYIVNAIQLRRAGSGFRKWTSADSSSLVNVTWITYCNEYRLQKHFSHRQTEREETPRVKAPIINSAPSSSPRVIMDSARSWFQKFQYKEKKESASENEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENIVGNNVRSPDSQNSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGIECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPKEAKLSFEAKDLICKLLCNVEQRIGTKGAIEIKAHPWFKGIQWDKLYQMEAVIIPEIHDELDTRNFEKYEELGVPGQTPSKSGPLRKATFVVQQKLSPKDVNFVGYTYKNFEIVNEHHLSGITETRKKLNKTKRPSVTTLFATADSSEQPVQRSFPNHLPTHLEVSESPDPSPRSTGSLQQQQKRWGK 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 261697 269564 + Cp4.1LG10g06600.1 Cpe10g00039 475576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00039 687 MobiDBLite consensus disorder prediction 640 660 - -
Cpe10g00039 687 SMART pkinase_C_6 538 609 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe10g00039 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Cpe10g00039 687 MobiDBLite consensus disorder prediction 1 20 - -
Cpe10g00039 687 ProSiteProfiles Protein kinase domain profile. 238 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00039 687 PANTHER SERINE/THREONINE-PROTEIN KINASE 159 646 - -
Cpe10g00039 687 MobiDBLite consensus disorder prediction 640 687 - -
Cpe10g00039 687 SMART serkin_6 238 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00039 687 MobiDBLite consensus disorder prediction 667 687 - -
Cpe10g00039 687 ProSiteProfiles AGC-kinase C-terminal domain profile. 538 617 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe10g00039 687 Gene3D Transferase(Phosphotransferase) domain 1 428 557 - -
Cpe10g00039 687 Gene3D Transferase(Phosphotransferase) domain 1 322 390 - -
Cpe10g00039 687 Pfam Protein kinase domain 239 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00039 687 CDD STKc_NDR_like 236 608 - -
Cpe10g00039 687 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Cpe10g00039 687 SUPERFAMILY Protein kinase-like (PK-like) 219 589 IPR011009 -
Cpe10g00039 687 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 159 646 - -
Cpe10g00039 687 Gene3D Phosphorylase Kinase; domain 1 210 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00039 Cpe-Chr10:261697 Cpe17g00198 Cpe-Chr17:1277546 0 dispersed
Cpe10g00039 Cpe-Chr10:261697 Cpe12g00136 Cpe-Chr12:864627 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62634 PF00069 Pkinase 1.60E-63 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00039 K08790 - csv:101208438 1018.84