Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00050 ATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGGAGGCTAAGGGACCTATTGCTCCTAAAGGATAATCGCTTCTGTGCGGATTGTCGCGCTTCAGACCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGCGGCGTTCACAGAAGCCTTGGTGCACATATATCAAAGGTGTTATCAGTGACATTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATTCTTCTGCAAATGCAATTTATGAAGCCTTTATTCCTGATGGATTTTCAAAACCTGGACCAGATGCCAGCCATGAACAACGTTCAAGATTTATTCGATCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTCATCAGCCCACTCTGACAAAAGCAATATCCAAGCAAACTTTGCTGCAAGGGTCATGAACAGTTTTCGTTCTTCACAAAAACAAGAAGGTATGGTAGACTTTATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGACAAGCGATCCTTATGTAGTCTTGACTCTTGGACGACAGACTGTCCAGACATGTGTAGTGGCGAGCAACTTGAACCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAATCTTTTGGATCCTTAAAGTTGCAAGTATACGATTATGACACGTTTTCAGCAGACGACATAATGGGAGAAGCAGACATTGATCTCCAGCCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGATTGTTTTCAAATATGCAAATTGGAAAATGGCTGAAATCGCACGATAATGCTCTCATGAACGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGACACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTGGAATGGATGGCCTCTTGA 966 41.93 MELGRPGSGKRRLRDLLLLKDNRFCADCRASDPKWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWNDDEIDAMIEIGGNSSANAIYEAFIPDGFSKPGPDASHEQRSRFIRSKYELQEFLKPSLRISSAHSDKSNIQANFAARVMNSFRSSQKQEGMVDFIGLLKVKVIKGTNLAIRDMMTSDPYVVLTLGRQTVQTCVVASNLNPVWNEELTLSVPQSFGSLKLQVYDYDTFSADDIMGEADIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALMNDSTVNIVDGKVKQEMTLKLQNVESGELDLELEWMAS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 333098 337841 - Cp4.1LG10g06370.1 Cpe10g00050 475587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00050 321 CDD C2_ArfGAP 166 310 - -
Cpe10g00050 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096
Cpe10g00050 321 PRINTS C2 domain signature 183 195 IPR000008 -
Cpe10g00050 321 PRINTS C2 domain signature 207 220 IPR000008 -
Cpe10g00050 321 PRINTS C2 domain signature 228 236 IPR000008 -
Cpe10g00050 321 Gene3D Arf GTPase activating protein 5 131 IPR038508 -
Cpe10g00050 321 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cpe10g00050 321 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cpe10g00050 321 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cpe10g00050 321 CDD ArfGap 22 119 - -
Cpe10g00050 321 Gene3D C2 domain 165 321 IPR035892 -
Cpe10g00050 321 Pfam C2 domain 167 257 IPR000008 -
Cpe10g00050 321 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Cpe10g00050 321 ProSiteProfiles C2 domain profile. 149 264 IPR000008 -
Cpe10g00050 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 312 IPR035892 -
Cpe10g00050 321 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Cpe10g00050 321 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Cpe10g00050 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 320 IPR044518 GO:0005096|GO:0005543
Cpe10g00050 321 SMART C2_3c 168 263 IPR000008 -
Cpe10g00050 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00050 Cpe19g01173 CCT
Cpe10g00050 Cpe20g00562 CCT
Cpe09g00726 Cpe10g00050 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00050 Cpe-Chr10:333098 Cpe13g00490 Cpe-Chr13:5053254 9.23E-115 dispersed
Cpe10g00050 Cpe-Chr10:333098 Cpe19g01173 Cpe-Chr19:7898767 0 wgd
Cpe10g00050 Cpe-Chr10:333098 Cpe20g00562 Cpe-Chr20:3336764 8.67E-178 wgd
Cpe10g00050 Cpe-Chr10:333098 Cpe09g00726 Cpe-Chr9:6673279 3.60E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00050 K12486 - csv:101218116 582.793