Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00052 ATGACTTCCTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCTGGACATTCTATGGCACCCCCTGCTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACGGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 618 42.56 MTSSVHDYSDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPAYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 342802 350979 + Cp4.1LG10g06460.1 Cpe10g00052 475589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00052 205 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 MobiDBLite consensus disorder prediction 1 35 - -
Cpe10g00052 205 MobiDBLite consensus disorder prediction 129 148 - -
Cpe10g00052 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 MobiDBLite consensus disorder prediction 162 205 - -
Cpe10g00052 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Cpe10g00052 205 Gene3D - 111 172 - -
Cpe10g00052 205 MobiDBLite consensus disorder prediction 170 205 - -
Cpe10g00052 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 190 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00052 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 367.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00493 Cpe-Chr5:2909784 Cpe10g00052 Cpe-Chr10:342802 4.14E-38 dispersed
Cpe07g01068 Cpe-Chr7:9496367 Cpe10g00052 Cpe-Chr10:342802 1.12E-32 dispersed
Cpe10g00052 Cpe-Chr10:342802 Cpe11g01190 Cpe-Chr11:9734654 3.03E-38 dispersed
Cpe10g00052 Cpe-Chr10:342802 Cpe19g01172 Cpe-Chr19:7895436 5.91E-128 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00877 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.4 8.9e-55 211.1
Cpe18g00169 CCT,CST,ECH 23 237 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 2.8e-48 189.5
Cpe04g00917 CCT,CST,ECH 23 236 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.6 2.4e-47 186.4
Cpe05g00493 CCT,CST,ECH 73 251 CCAAT-HAP2 Transcription Factor Family AT5G12840 58.9 3.4e-46 182.6
Cpe16g00877 CCT,CST,ECH 105 343 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.2 2.9e-46 183.0
Cpe04g00917 CCT,CST,ECH 1 244 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 3.8e-46 182.6
Cpe05g00493 CCT,CST,ECH 87 235 CCAAT-HAP2 Transcription Factor Family AT3G20910 66.0 1.1e-45 181.0
Cpe18g00169 CCT,CST,ECH 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.5e-45 178.7
Cpe10g00052 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.7 3.9e-49 191.8
Cpe19g01172 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 52.2 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50061 PF02045 CBFB_NFYA 4.20E-26 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00052 Cpe_Chr10 FPKM 4.075847 3.199044 2.309631 3.034533 2.344053 3.3611 2.939085 0.886159 0.904299 1.085554