Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00053 ATGGCGCTTCTCATGCATAAAGAGATGGGTTCCAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCTAAGCCCAGTTCTCTCAAAAGGCAGCAGCTCATTAGAGAGTGCCCGATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGCGAGAAGCAAAGGAAGGAATCTTCTCGGCTCCAGAGCGTTAATAGAAAGTTGTCAGCGATGAACAAATTGTTGATGGAGGAGAATGACCGCTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATGTCCGCCAGAAACTAAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTCAACAACCCAGCTGGTCTTCTAGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATTGGTATCGTTGCTGTTTCCCGCAACTGCAGCGGGGTGGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCCTGGTATCGTGACTGCCGATGTCTTAACGTTGTAAGTGTTATTCCTACGGGAAATGGGGGAACAATAGAGCTCATATACATGCAGACTTACGCTCCAACTACATTAGCAGCAGCACGCGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTGTAGTGGTTTGTGAGAGGTCATTGACTTCTTCTACTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTTAGAGCTGAGATGCTTCCTAGTGGCTACTTAATACGAGCGTGCGAGGGTGATGGATCGATTATTCACATTGTCGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACAACTGCTGCATTGCGTCACGTTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATACACTGGTGGACGTCAACCCGCTGTACTGCGGACATTCAGTCAAAAACTTTGCAGGGGTTTCAACGATGCTGTTAATGGGTTTGCTGATGATGGTTGGTCGCCTATGGGCAGTGACGGTTTGGAGGATGTGACAATTGTCATAAATTCATCAGCAAACGTGTTTCCCGGATCCCAGTATAACACGTCGATGTATCCCTCTTTTGGTGGTGGAGTGATGTGTGCAAAAGCGTCGATGTTACTTCAGGACGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTGTGCCGCAAGTTTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATATTGCCTCTTGCTTCTACTGTGGAGCATGAGGAGTTTTTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCTCCCGATGACGTTGCTTTGGCTGGCCGAGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCGCCTATAGATGAATCCTTTGCGGATGATGCTCCATTACTTCCTTCAGGATTTCGTGTCATCCCACTGGATCCGAAAACAGATGATCCTACTGCTGCTCGAACATTGGATTTGGCCTCTACTCTTGAAGGATTCACAAATCTTCCATCTGGTATTTGCATATCGAGTATGGGCCGTCCCATTTCTTACGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATAAACTGGTCCTTTGTGTGA 1986 47.43 MALLMHKEMGSSKYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYVRQKLSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVVSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSVVVCERSLTSSTGGPAGPPPSTFVRAEMLPSGYLIRACEGDGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTTAALRHVRQIAQETNGEIQYTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANVFPGSQYNTSMYPSFGGGVMCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYCAASLKASPYAVPCARPGGFPSSQVILPLASTVEHEEFLEVVRLEGLAFSPDDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDDPTAARTLDLASTLEGFTNLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 353954 359733 + Cp4.1LG10g06480.1 Cpe10g00053 475590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00053 661 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Cpe10g00053 661 SMART HOX_1 10 76 IPR001356 GO:0003677
Cpe10g00053 661 Gene3D - 177 374 IPR023393 -
Cpe10g00053 661 Coils Coil 78 102 - -
Cpe10g00053 661 CDD START_ArGLABRA2_like 155 371 - -
Cpe10g00053 661 Pfam MEKHLA domain 602 660 IPR013978 -
Cpe10g00053 661 CDD bZIP 65 104 - -
Cpe10g00053 661 MobiDBLite consensus disorder prediction 118 151 - -
Cpe10g00053 661 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 613 661 - -
Cpe10g00053 661 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 613 - -
Cpe10g00053 661 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 613 IPR044830 GO:0003700
Cpe10g00053 661 Gene3D - 6 80 - -
Cpe10g00053 661 ProSiteProfiles 'Homeobox' domain profile. 8 72 IPR001356 GO:0003677
Cpe10g00053 661 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 613 661 IPR044830 GO:0003700
Cpe10g00053 661 Pfam Homeodomain 13 71 IPR001356 GO:0003677
Cpe10g00053 661 MobiDBLite consensus disorder prediction 118 154 - -
Cpe10g00053 661 CDD homeodomain 13 73 IPR001356 GO:0003677
Cpe10g00053 661 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289
Cpe10g00053 661 SMART START_1 160 370 IPR002913 GO:0008289
Cpe10g00053 661 SUPERFAMILY Bet v1-like 161 372 - -
Cpe10g00053 661 Pfam START domain 161 369 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00053 Cpe20g00561 CCT
Cpe10g00053 Cpe19g01171 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00053 Cpe-Chr10:353954 Cpe16g00533 Cpe-Chr16:6249568 2.26E-15 dispersed
Cpe10g00053 Cpe-Chr10:353954 Cpe19g01171 Cpe-Chr19:7886271 0 wgd
Cpe10g00053 Cpe-Chr10:353954 Cpe20g00561 Cpe-Chr20:3318745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50062 PF01852 START 2.60E-49 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00053 K09338 - csv:101210154 1147.88