Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00065 ATGAGGCTTTCAAGTGCTGGTTTTAGTCCTCAGCCTCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCCTGTGCGGGCCCCCTTGTTTCTCTACCTGCTGTTGGAAGCCGGGTTGTCTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTAGATGCCCATATACCCAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTCACAATGCATGCAGATGTCGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCAGTGCTCAAGAACAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGCGCCCCCAGCAAACAACCAACCAATTATTTTTGCAAAACATTGACAGCAAGTGACACGAGTACACATGGAGGATTTTCTGTTCCTCGTAGAGCTGCCGAGAAAGTGTTCCCACCATTGGACTTTTCTCAGCAGCCACCTGCTCAGGAGTTGATCGCCAGGGATCTGCACGAGAATGAATGGAAATTTAGGCATATTTTTCGGGGCCAGCCCAAAAGGCATCTTCTTACGACTGGATGGAGTGTGTTCGTAAGTGCTAAGAGGCTCGTTGCTGGCGATTCGGTTATCTTCATTTGGAATGAGAAGAATCAGTTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCGTCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTTGCCCATCAGAGTTCATCATACCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTCTCCGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATTCGACCCGGTGGCCGAATTCACACTGGCGGTCAGTCAAGGTTGGATGGGATGAATCTACGGCTGGGGAGAGACAGCCAAGGGTGTCGTTATGGGAGATCGAACCACTTACGACGTTCCCACTGTATCCTTCTCCATTTTCCCTCAGGCTTAAGCGACCGTGGCCAACTGGATTTCCTTCTTTCCATGGTCTAAAAGAGGATGAACTGGGATTGAATTCTCAACTAATGTGGCTAAGGGGGGATGGTCTAGATCGTGGGATTCAAGCTATGAACTTCCCTGGCATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTATGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTCCAGGCTGCTTCGCTTCTTCAATTTCAACAAACCCAAACTCTTCCGAACAGGCCTGCTACTTTCATGTCGCCTCAGATATTGCAGCAGCCTCAACCGACGTTTATTCAGGGCGACGATAACCAACGTCTCTCTCGTTCTCAGGCTCAAACCCTGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAATCAGCAGCAGCAGCAACAGCAAGTGTTTGATCACCAACAAATCCCAAGTACCATCACTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAAGCTCAATCCCTGCAAACGACTCCTCCGTTATGTCGTCAGCAGAGTTTTTCCGATTCAAATCCCAACCATGTGACGAGTCCTATCATTTCACCCTTGCACAGCCTGTTAGGGTCGTTTCCGCAAGACGAATCATCTCAGTTGCTCAATCTTCCTCGAACCAATCCCATGGTACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTCCTCTCTTCTGTAAATTCTCAGTTTGTTCTTCCCCAAGGGGAAAATATGGGGACAACTCAGACGAACATCTCTCAGAATGCTATTTCGTTACCGCCTTTTCCTGGTCGAGAGTGTTCGTTAGATCAAGGGAACGCCGATCCGCAGAGTAATCTTCTTTTTGGTGTCAATATAGAGCCTTCAAGTCTTCTAATGCAGAGTGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAACTATGTGAATACTGCTGCTTCCAACTTCTCTGCCAATCCGACCGGGACGCCTTCCAATTGCATTGAGGATTCGGGTTTCTTGCAGTCTCCAGAGAACACAGGCCAAGTAAACCCATCAACCAGAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTGGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAATTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACGTTCTTCTTCTTGGGGACGATCCCTGGCCCGAGTTCGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACAAGGCCTAGAGCTGTTGAAATCGGTCCCAATTCAGAGGCTCTCGAATGGCAGCTGTGATAACTATGCCAACAGACAGGAGTCGTCCAGAAACTTGAGTACCGGGATAACTTCTGTCGGGTCGCTCGAGTACTAA 2676 48.32 MRLSSAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPLYPSPFSLRLKRPWPTGFPSFHGLKEDELGLNSQLMWLRGDGLDRGIQAMNFPGIGVAPWMQPRLDASMVGMQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQTLPNRPATFMSPQILQQPQPTFIQGDDNQRLSRSQAQTLPTVLQQEIKHQTFNNQQQQQQQVFDHQQIPSTITTMSQFSSASQSQAQSLQTTPPLCRQQSFSDSNPNHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMVHSSTWPSKRAAVDPLLSSVNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQSGMPNLRGICSDSDSTAIPFSSNYVNTAASNFSANPTGTPSNCIEDSGFLQSPENTGQVNPSTRTFVKVYKSGSLGRSLDISKFSSYHQLRSELAHMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLKSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 472288 478185 + Cp4.1LG10g06190.1 Cpe10g00065 475602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00065 891 PANTHER AUXIN RESPONSE FACTOR 6 1 869 - -
Cpe10g00065 891 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe10g00065 891 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cpe10g00065 891 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cpe10g00065 891 ProSiteProfiles PB1 domain profile. 757 841 IPR000270 GO:0005515
Cpe10g00065 891 MobiDBLite consensus disorder prediction 546 580 - -
Cpe10g00065 891 Gene3D - 291 363 - -
Cpe10g00065 891 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cpe10g00065 891 SUPERFAMILY CAD & PB1 domains 748 832 - -
Cpe10g00065 891 SMART B3_2 127 229 IPR003340 GO:0003677
Cpe10g00065 891 Gene3D - 125 228 IPR015300 -
Cpe10g00065 891 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cpe10g00065 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 869 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe10g00065 891 Gene3D - 753 846 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00065 Cpe20g00544 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01963 Cpe-Chr1:16738823 Cpe10g00065 Cpe-Chr10:472288 0 dispersed
Cpe10g00065 Cpe-Chr10:472288 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe13g00800 Cpe-Chr13:7188933 Cpe10g00065 Cpe-Chr10:472288 2.23E-75 dispersed
Cpe10g00065 Cpe-Chr10:472288 Cpe19g01157 Cpe-Chr19:7752738 0 wgd
Cpe10g00065 Cpe-Chr10:472288 Cpe20g00544 Cpe-Chr20:3180981 3.39E-97 wgd
Cpe10g00065 Cpe-Chr10:472288 Cpe09g00742 Cpe-Chr9:6895319 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50063 PF02362 B3 1.00E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00065 - - csv:101210406 1633.23