Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00071 ATGGCTTTCAGGTCGAGCAGTCATACCAAAACGCGGGTGGGGAGATATGAGCTGGGGCGAACCCTTGGAGAGGGCAGCTTCGCGAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTCGCCATTAAAATCCTCAACAAAGAGGACATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACGATGAAACTCATTAGACATCCAAATGTCATTCGAATGTATGAGGTGATGGCTAGCAAAACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCAACAAAATTGCATGTAATGGAAGATTCAAAGAAGATGAAGCAAGAAAATATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCACAGCAGAGGCGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCCAGTGGCGTTCTAAAAGTTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGCTACTGTGGTGCAAAGGCGGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAAGCCAGTCTCGTGACATTGTATAAAAAGATATTCAAGGCCGACTTCAAATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTCGATCCGAACCCGTTAACTAGAATTACAATTGTTGAGGTTCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTCGAAAACGACGAAATCGTTCTTGATGACATTGACGACATCTTTAATGAATCAGGGGTCACTCATAACCTTGTAGTCGAGAAGAGAGAAGAAGGGCTCGCATCCCCTGCATCACCTGTCACCATGAATGCATTCGAGCTCATCTCGAAATCTCAGGGTCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGCTATCTAAACGTGACAAAAGTTTCACATCCCATTGTCCAGCAGATGAAATCCTTTCCAAGATAAAAAAGACAGCAGTTCCTATGGGTTTTGATGTGAAGATCAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTCGCTCCATCGTTACATATGGTAGAGCTCCGCAAAGCTGGAGGGGATACTTTAGAATTTCACAAGTTCTATAATAACCTCTCAACTGGACTGAAAGATGTTGTATGGCGAACCGGAGACGAGACGGAGCAGGAAAGTAACGGTGTAGCAAATGCTTGA 1371 42.74 MAFRSSSHTKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILNKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFNKIACNGRFKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYCGAKADLWSCGVILFVLMAGYLPFEEASLVTLYKKIFKADFKCPPWFSSSAKKLIKRILDPNPLTRITIVEVLENDWFKKGYKPPTFENDEIVLDDIDDIFNESGVTHNLVVEKREEGLASPASPVTMNAFELISKSQGLNLATLFEKQMGLSKRDKSFTSHCPADEILSKIKKTAVPMGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFHKFYNNLSTGLKDVVWRTGDETEQESNGVANA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 526181 530043 - Cp4.1LG10g06160.1 Cpe10g00071 475608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00071 456 SUPERFAMILY Protein kinase-like (PK-like) 13 280 IPR011009 -
Cpe10g00071 456 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Cpe10g00071 456 Gene3D Kinase associated domain 1, KA1 316 441 - -
Cpe10g00071 456 Pfam NAF domain 318 377 IPR004041 GO:0007165
Cpe10g00071 456 CDD STKc_SnRK3 15 270 - -
Cpe10g00071 456 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 446 - -
Cpe10g00071 456 CDD CIPK_C 322 437 - -
Cpe10g00071 456 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cpe10g00071 456 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Cpe10g00071 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cpe10g00071 456 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cpe10g00071 456 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00071 456 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00071 456 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00071 456 PANTHER SERINE/THREONINE KINASE 9 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00071 Cpe20g00539 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00542 Cpe-Chr5:3233700 Cpe10g00071 Cpe-Chr10:526181 8.25E-177 dispersed
Cpe06g00481 Cpe-Chr6:2833608 Cpe10g00071 Cpe-Chr10:526181 9.03E-53 dispersed
Cpe10g00071 Cpe-Chr10:526181 Cpe18g00496 Cpe-Chr18:5756549 2.85E-177 dispersed
Cpe17g00308 Cpe-Chr17:2085688 Cpe10g00071 Cpe-Chr10:526181 4.99E-86 dispersed
Cpe10g00071 Cpe-Chr10:526181 Cpe20g00539 Cpe-Chr20:3136138 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62635 PF00069 Pkinase 3.00E-74 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00071 - - csv:101214052 811.986