Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00122 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTCAAAAAAGCTTATGAACTTTCTGTTCTCTGTGATGCCGAAGTTGCTCTCATCGTTTTCTCAAGCCGCGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACCATTGATAGATACAAGAAGGCATCCTCGGATTCCTCAAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTTCGAGTTCAGATTGGTAACTTGCAGAATTCAAACAGGAACATGCTGGGTGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTCGAGAGCAAACTTGAGAAAGGAATCAGCAGGATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATTGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTCGAGCTGATGCAATCTCATCCCTACGATCCCCGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCACCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 690 42.61 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 785283 789657 - Cp4.1LG10g05620.1 Cpe10g00122 475659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00122 229 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g00122 229 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Cpe10g00122 229 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 218 - -
Cpe10g00122 229 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Cpe10g00122 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 Gene3D - 21 103 IPR036879 GO:0003677|GO:0046983
Cpe10g00122 229 Coils Coil 132 152 - -
Cpe10g00122 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cpe10g00122 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g00122 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00122 Cpe19g01096 CCT
Cpe10g00122 Cpe20g00485 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01021 Cpe-Chr2:9380290 Cpe10g00122 Cpe-Chr10:785283 1.42E-91 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe17g01070 Cpe-Chr17:8101437 4.43E-49 dispersed
Cpe10g00528 Cpe-Chr10:3096610 Cpe10g00122 Cpe-Chr10:785283 1.86E-43 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe16g00732 Cpe-Chr16:7416046 1.11E-64 wgd
Cpe10g00122 Cpe-Chr10:785283 Cpe19g01096 Cpe-Chr19:7418452 9.94E-163 wgd
Cpe10g00122 Cpe-Chr10:785283 Cpe20g00485 Cpe-Chr20:2812620 2.97E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50068 PF01486 K-box 2.20E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00122 K09264 - csv:101221430 414.846