Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00139 ATGGCCGATCGGCCGGACTCTGACAAGAAGTCCGAAAGCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGGCGGTACGAGATCGGGAAGCTCCTTGGGCATGGGACCTTTGCAAAGGTCTATCATGCCCGAAACATCAAATCCGACGAAGGTGTCGCCATTAAAGTCATCGATAAGGAGAAGATTCTCAAGGGCGGACTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGGGTTCGACATCCCAACATTGTGCAACTTTTTGAGGTTATGGCCACCAAGACCAAGATCTACTTCGTTATGGAATACGTCCGTGGCGGCGAGCTCTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCCCGAAAGTATTTTCAGCAATTAATTTCCGCCGTTTCCTTTTGCCACGCGCGTGGTGTTTATCATCGCGACCTTAAGCCGGAGAATTTATTGCTCGATGAAAATGGGGATCTTAAGGTCTCCGATTTTGGCCTAAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTCCATACTTTCTGTGGTACACCGGCGTATGTTGCTCCGGAGGTATTGGCCCGCAAAGGCTACGAGGCCGCTAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCAGGCTATTTGCCCTTCCACGACCAAAACATCATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTCCGGTGTCCGAGATGGTTCTCGCCGGAGCTAGTTCGACTCCTGTCTCGTCTTTTGGATACAAATCTGGAAACCCGTTTCACAATTCCAGAAATCATGGAGAATCGATGGTTCAAAAAGAGGTATAAGCATATAAAATTCTACATCGAAGATGATAAGGTGTGCAACGTGGAGGACGACACCCAAGATGTGGATTCCTTGTCGGATCAATCTCAATCGGAATCGGATTCCGAATTCATTGAGACAAGAAGAAAGATGGGTTCACTCCCAAGACCGGCGAGTTTGAATGCATTCGATATAATATCATTTTCCCCGGGATTTGATCTTTCCGGGCTGTTCGAGGATGGAGGGGAGGAGGCAAGATTCGTGTCCAGTGCTCCAGTGTCGAAGATTATATCGAAGCTGGAAGATATCGCAAAATTGGTGAGTTTTAGCGTGAGGAAGAAGGACTGCAGGGTTAGCTTAGAGGGCACACGGGAAGGCGTGAAAGGGCCATTGACGATCGCGGCGGAGGTGTTCGAGTTGACGACGAAACTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGCGATAAAACAGAGTATGAAGAGTTCTGTAACAAGGAATTGAAACCGGCATTGTTGAATCTGAAGGAGGAGGCGGGGGCAGGTGCTCCGTCACACATACCTTCAGATTCTGAATGA 1407 49.18 MADRPDSDKKSESTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKSDEGVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVSFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELVRLLSRLLDTNLETRFTIPEIMENRWFKKRYKHIKFYIEDDKVCNVEDDTQDVDSLSDQSQSESDSEFIETRRKMGSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEDIAKLVSFSVRKKDCRVSLEGTREGVKGPLTIAAEVFELTTKLVMVEVKRKGGDKTEYEEFCNKELKPALLNLKEEAGAGAPSHIPSDSE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 885645 887051 + Cp4.1LG10g05450.1 Cpe10g00139 475676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00139 468 CDD STKc_SnRK3 25 279 - -
Cpe10g00139 468 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00139 468 Pfam NAF domain 334 390 IPR004041 GO:0007165
Cpe10g00139 468 Gene3D Transferase(Phosphotransferase) domain 1 17 332 - -
Cpe10g00139 468 SUPERFAMILY Protein kinase-like (PK-like) 22 316 IPR011009 -
Cpe10g00139 468 MobiDBLite consensus disorder prediction 304 324 - -
Cpe10g00139 468 CDD CIPK_C 338 448 - -
Cpe10g00139 468 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00139 468 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Cpe10g00139 468 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00139 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cpe10g00139 468 Gene3D Kinase associated domain 1, KA1 333 451 - -
Cpe10g00139 468 PANTHER - 18 452 - -
Cpe10g00139 468 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
Cpe10g00139 468 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00139 Cpe-Chr10:885645 Cpe10g00992 Cpe-Chr10:5638980 3.31E-177 dispersed
Cpe10g00139 Cpe-Chr10:885645 Cpe19g01074 Cpe-Chr19:7327724 0 wgd
Cpe10g00139 Cpe-Chr10:885645 Cpe20g00467 Cpe-Chr20:2703149 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62638 PF00069 Pkinase 1.00E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00139 - - csv:101214053 844.728