Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00145 ATGCAAGAATCTGATGATGACATGAAGCAAATGATGTATGTTCATGGTAGCGCCACGGCTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGCGGCGGTGAAGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCATGTCCGAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGTAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCCAATTGCCGGACGCTTTCCGGCGAGCTGCCCGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTGGCGGTGGCGGAACAGGATTTTACCCAATCTTTACACAGAGACAGAGCAAAACAGAGGAAGTAA 528 49.81 MQESDDDMKQMMYVHGSATAGIKLFGTIIPLQTRKVKDQPEKGGGGGGEGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQSLHRDRAKQRK 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 906579 908994 + Cp4.1LG10g05410.1 Cpe10g00145 475682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00145 175 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Cpe10g00145 175 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 14 169 - -
Cpe10g00145 175 PANTHER CYCLIC DOF FACTOR 2 14 169 IPR045174 GO:0003700|GO:0006355
Cpe10g00145 175 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Cpe10g00145 175 Pfam Dof domain, zinc finger 60 115 IPR003851 GO:0003677|GO:0006355
Cpe10g00145 175 MobiDBLite consensus disorder prediction 33 55 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00145 Cpe20g00461 CCT
Cpe10g00145 Cpe19g01067 CCT
Cpe09g00808 Cpe10g00145 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00145 Cpe-Chr10:906579 Cpe03g00467 Cpe-Chr3:2700951 3.59E-37 dispersed
Cpe10g00145 Cpe-Chr10:906579 Cpe19g01067 Cpe-Chr19:7305124 4.46E-94 wgd
Cpe10g00145 Cpe-Chr10:906579 Cpe20g00461 Cpe-Chr20:2663589 5.87E-51 wgd
Cpe10g00145 Cpe-Chr10:906579 Cpe09g00808 Cpe-Chr9:7508869 2.83E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50071 PF02701 zf-Dof 1.20E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00145 - - csv:101215015 287.345