Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00145 | ATGCAAGAATCTGATGATGACATGAAGCAAATGATGTATGTTCATGGTAGCGCCACGGCTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGCGGCGGTGAAGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCATGTCCGAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGTAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCCAATTGCCGGACGCTTTCCGGCGAGCTGCCCGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTGGCGGTGGCGGAACAGGATTTTACCCAATCTTTACACAGAGACAGAGCAAAACAGAGGAAGTAA | 528 | 49.81 | MQESDDDMKQMMYVHGSATAGIKLFGTIIPLQTRKVKDQPEKGGGGGGEGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQSLHRDRAKQRK | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 906579 | 908994 | + | Cp4.1LG10g05410.1 | Cpe10g00145 | 475682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00145 | 175 | ProSitePatterns | Zinc finger Dof-type signature. | 64 | 100 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe10g00145 | 175 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 14 | 169 | - | - | |
Cpe10g00145 | 175 | PANTHER | CYCLIC DOF FACTOR 2 | 14 | 169 | IPR045174 | GO:0003700|GO:0006355 | |
Cpe10g00145 | 175 | ProSiteProfiles | Zinc finger Dof-type profile. | 62 | 116 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe10g00145 | 175 | Pfam | Dof domain, zinc finger | 60 | 115 | IPR003851 | GO:0003677|GO:0006355 | |
Cpe10g00145 | 175 | MobiDBLite | consensus disorder prediction | 33 | 55 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe10g00145 | Cpe20g00461 | CCT | |
Cpe10g00145 | Cpe19g01067 | CCT | |
Cpe09g00808 | Cpe10g00145 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00145 | Cpe-Chr10:906579 | Cpe03g00467 | Cpe-Chr3:2700951 | 3.59E-37 | dispersed | |
Cpe10g00145 | Cpe-Chr10:906579 | Cpe19g01067 | Cpe-Chr19:7305124 | 4.46E-94 | wgd | |
Cpe10g00145 | Cpe-Chr10:906579 | Cpe20g00461 | Cpe-Chr20:2663589 | 5.87E-51 | wgd | |
Cpe10g00145 | Cpe-Chr10:906579 | Cpe09g00808 | Cpe-Chr9:7508869 | 2.83E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50071 | PF02701 | zf-Dof | 1.20E-31 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00145 | - | - | csv:101215015 | 287.345 |