Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00163 ATGGCTTCATCAAACAGTCACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAATTCCCATCACCAATGGCAACATGACATCAACTGCCTCAGATCTGCCCCTTACAACACAGTTGTTGGTGGATATGAAGAGAAAAGTCCAGACCCAAAGCCAAGATGGAATCCAAAGCCTGAACAAATTAGGATTCTTGAAGCGATTTTCAATTCAGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTCGAGGTCAGTTACAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAACAAACTCCGCCATCTCCATAACTCCAAATCCAATCATAATTCCCCAACCACCACCACCACCGCCGCCGCCGCCGCTCCTACAACAACAACAACAAAAACAACTACTCTTTCTCCCACCGCCGCCAACCCCACCAACCCCACCAACCCCGCCGCCACTTGTTCTTCCTCTTCTTCCTCCGACAAATCCTCTCCCAAAATATCACCCATGAAAAGTTTCACCTCCAATTCGGTGTCTCAGAGCTACCTTCAACAACCCACCAACGAGCTCTTGCCTGAATCCTTCTTCTTCCCAATGCCACAAACCGGCGACGGCGGCGGTGTAATCTCTAATTTGGGTCAAGGGTTTTGCTTTTCTGAGCTTTGTAGTGTAGTGCAACACGTTCCTGACCATGGGTTCGAATCTTGCACAAACCTGTTGCTGAGTGAGTCTGATCCATTTAAGAAAGATTTGATGAAGTCACAGCCACAGCCACAGCCACAGTTCATGAATTATCATCCTTATTTGGATATCTCTACGGATCAAAGCCTTCCCCAAACAACAATTTCCACCGCAATTCCTCAAGGTTATGATTTGAAGAATGTAGCGTTAGATGGACGTATGCATGGGGGTTTGAGCAGGAATGATTGTGTGTTTGCAGGTGTAGGTGAAGTTTATGGAGTAGGAGGGAAATCAACGGTGTTCATCAATGGTGTAGCGTTCGAGGTTGGTTGTGGGCCGTTTAATGTTCGTGAGGCTTTTGGTGATGATGCCGTTCTGATTCACTCCACCGGTCAGCCTGTCCTGACCAATGACTGGGGCCTCACTCTCCACTCACTCCAACATGGCGCTTACTATTATCTGATATAA 1176 46.43 MASSNSHWPSMFKSKPCNSHHQWQHDINCLRSAPYNTVVGGYEEKSPDPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRGQLQEYGQVGDANVFYWFQNRKSRSKNKLRHLHNSKSNHNSPTTTTTAAAAAPTTTTTKTTTLSPTAANPTNPTNPAATCSSSSSSDKSSPKISPMKSFTSNSVSQSYLQQPTNELLPESFFFPMPQTGDGGGVISNLGQGFCFSELCSVVQHVPDHGFESCTNLLLSESDPFKKDLMKSQPQPQPQFMNYHPYLDISTDQSLPQTTISTAIPQGYDLKNVALDGRMHGGLSRNDCVFAGVGEVYGVGGKSTVFINGVAFEVGCGPFNVREAFGDDAVLIHSTGQPVLTNDWGLTLHSLQHGAYYYLI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 978616 981127 + Cp4.1LG10g05160.1 Cpe10g00163 475700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00163 391 Gene3D - 50 115 - -
Cpe10g00163 391 CDD homeodomain 49 111 IPR001356 GO:0003677
Cpe10g00163 391 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 391 IPR044557 GO:0003700|GO:0050793
Cpe10g00163 391 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Cpe10g00163 391 ProSiteProfiles 'Homeobox' domain profile. 46 111 IPR001356 GO:0003677
Cpe10g00163 391 Pfam Homeodomain 50 110 IPR001356 GO:0003677
Cpe10g00163 391 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 391 - -
Cpe10g00163 391 SMART HOX_1 48 115 IPR001356 GO:0003677
Cpe10g00163 391 MobiDBLite consensus disorder prediction 109 188 - -
Cpe10g00163 391 MobiDBLite consensus disorder prediction 119 188 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00163 Cpe19g01046 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00163 Cpe-Chr10:978616 Cpe20g00149 Cpe-Chr20:844047 2.71E-16 dispersed
Cpe10g00163 Cpe-Chr10:978616 Cpe19g01046 Cpe-Chr19:7227905 2.03E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50072 PF00046 Homeodomain 4.50E-14 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00163 - - bhj:120074379 486.493