Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00168 ATGGGTGCTCTCATCGATCTTAATACCACTGAAGAAGATGAATCTCCCTCTTCTGCTGCTTCCTCTGTTTCTTCTTCCTCTGCTTCTGCTCTGACCTCCTCTCCTTCGCCTTCTCTTACCTCTTCTATTTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCTCTCACCTCTTTGCCCAAGAAAGGGAACTTGGTTGTCTACTTGCCGCAGGGTCACTTGGAGCAGATGCAAGAATTTCCGGCTACGCCCTCTGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACCAGGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCATTGCTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAGCAATGACATTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACCACAACACCTCACATGTTCTGCAAGACCCTTACTGCTTCAGACACCAGTACTCATGGAGGATTCTCCGTCCCCAGGCGTGCAGCGGAGGATTGCTTCCCGCCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTTGTTGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTTGTGAACAAGAAAAGGCTTGTTTCTGGTGATGCAGTGCTTTTTCTTAGGGGAAACGATGGTGAATTAAGACTGGGAATACGAAGAGCTGCACAGCTTAAAAGTGGTTCTACATTTTCTAATATTTGCAGTCAGAAGCTCAATTCTAGTAGTATCATGGATGTGGTTAATGCAATATCTTCCAAAAGTTCCTTCAGCGTATGCTACAATCCTAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTTCATAAGTTCTTGAAGAGCATGAACCGTTCCTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTCGAAACCGAAGATGCTGCTGATCTGAGACACACTGGACATATAACTGGAATTGGCGATGTTGATCCTATTGGATGGCCGGGATCACGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAATCAACAGGCATGGCAGGGTTTCGCCTTGGGAGATCGAGCCCTCTGGTTCTGTTTCTATGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGATCCAGGATTGGTCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCACATGGGATTGGAGCAACAGACTTTGGTGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATTTTAGGCTACAATACTCCCACTGACTGTGATGACAACACTCGTTATCATCCACCTGAGAAGAGGAGATTGTTGCCTGACTTACATGGTTCTGGTATAGCTCTGATGAGAAATGGTCCCAGAAACCGACTTATCAACTCCGAAACTTCCTCACGGGGTTTCGTGTTTGATGAATCCTTCCAATTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAGGTCCCTTTTATGGTAGGGCCATGGCCACCAATGAAGTTAAGGAAAGTGGTGGTTGCGGTCCTGTCGATGGTTTTCGATTGTCTACGACTAGAGATGGATGGCCCACGACAATGCAATGTGAAAATTTCCACACACGCTCTTCCATTCCTTCTGCTCAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCTAAGCTTTGATTCACATAACCGTGGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACCGACAATAGCATGTGTCCCACTTCATTGGGCGAGCTGAATCTGCTGGGCCTATCCCATCCTTCTACAACAACAGCTTCAGCGTTTTCAGGCAGTAAAGATCTGTCTTCAACTACCAAAGCTGGCTGCAGATTGTTTGGGTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGGTTCTCCAGCAACAACTCCCATTCATGCAGGAACCACCATTGGAGCTCAATGTCCTTTGAAGTCTCCTCTGATGAGCAAGGTGGTTGGGAGCAACTGTACCAAAGGGGCTCTTCAGTACCACTATGCAAATTACAGTACCTACTACTGA 2136 46.49 MGALIDLNTTEEDESPSSAASSVSSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPKKGNLVVYLPQGHLEQMQEFPATPSDLPPHILCRVIDVQLHQAEAGSDEVYAQVSLLPENEQMEHKMQEEMSNDIEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSTFSNICSQKLNSSSIMDVVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGMRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSLMVRWDDGEINRHGRVSPWEIEPSGSVSMSSNLVPPGLKRSRIGLSSTKLEFPVPHGIGATDFGESLRFHKVLQGQEILGYNTPTDCDDNTRYHPPEKRRLLPDLHGSGIALMRNGPRNRLINSETSSRGFVFDESFQFQKVLQGQEIFPGPFYGRAMATNEVKESGGCGPVDGFRLSTTRDGWPTTMQCENFHTRSSIPSAQVSSPSSVFMFQQSMVPVLSFDSHNRGIMNKSTSHNSGTAFMTDNSMCPTSLGELNLLGLSHPSTTTASAFSGSKDLSSTTKAGCRLFGFSLTEEKNVGNTDKGSPATTPIHAGTTIGAQCPLKSPLMSKVVGSNCTKGALQYHYANYSTYY 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1007566 1012030 + Cp4.1LG10g05170.1 Cpe10g00168 475705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00168 711 MobiDBLite consensus disorder prediction 10 36 - -
Cpe10g00168 711 Gene3D - 149 253 IPR015300 -
Cpe10g00168 711 SMART B3_2 151 253 IPR003340 GO:0003677
Cpe10g00168 711 MobiDBLite consensus disorder prediction 1 36 - -
Cpe10g00168 711 CDD B3_DNA 149 251 IPR003340 GO:0003677
Cpe10g00168 711 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe10g00168 711 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Cpe10g00168 711 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Cpe10g00168 711 Gene3D - 314 388 - -
Cpe10g00168 711 PANTHER AUXIN RESPONSE FACTOR 3 34 702 - -
Cpe10g00168 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe10g00168 711 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00168 Cpe19g01041 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00168 Cpe-Chr10:1007566 Cpe16g00547 Cpe-Chr16:6316397 9.65E-118 dispersed
Cpe10g00168 Cpe-Chr10:1007566 Cpe19g01041 Cpe-Chr19:7200777 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50074 PF02362 B3 1.60E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00168 K14486 - csv:101220018 1196.8