Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00193 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTTTCGCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATCGTCGAACCACCACCTCGGAATTACGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCCCAGAAACCAAATCCTGATATCTCAAAGATTCAGCGAAATTTCATAGCCAACAAACAGCGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGAAGTTTTCAAGGAAGCAAAATCCGCCAGTAAGAGATTCTCGACTCCAACGCCTCGACTTAGAGAACGAACTAGAGAATTCAAGAACAAGCTATTCAATAAGGACCCGCAAGATTCAAAATCGTCCACTTCCAAGACATCGTCGAATACCAGTCCCCTGAAACTCCTAGCTTCGTCCAAAGGAGGTGAAAAGTCAAAGTTCCGGAAGGACTCTTCCTGGACCAAATATTTCGATTCCGGTGGCGGAAAAGTCACAGCGGTCGAAACCGCTGACGACTGGAGCGTTGATCTATCCAAGCTGTTTGTTGGGTTAAGGTTCGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAACGATGAACCTGTTGCTGTTAAACTCATTAGAGTGCCTGAGGACGACGATAGTGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTAACCCTTTTATCTCGTCTCCACCATCCTAATGTTTTAAAGTTTGTAGCTGCGTGTAGGAACCCGCCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCGTACTTGCTCAAACTCGAGCGCCAATCTCTCCCTTTGCAGAAACTAATTGAGTTCTCTTTAGATGTGGCTCGTGGCATGGAATACATTCATTCCCAAGGCATAATCCATCGGGATCTCAAGCCTGAGAATGTTCTTATTGATGAGGACTTCCACCTGAAAATTGCAGATTTTGGGATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCCGATGATCCCGGAACGTATCGATGGATGGCACCGGAGATGATCAAACATAAACCCTATGGTCGAAAAGTTGATGTATACAGCTTTGGGCTCATGTTGTGGGAAATGGTGTCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTCAATAAGAATCTGAGGCCTGTTATCTCGAGCGACTGCCCGTTGGCAATGCGAGCTTTGATCGAGCAATGTTGGTCTGTGCAACCAGACAAGAGACCTGATTTCTGGCAGATTGTGAAGGTATTAGAGCAATTCGAAGCTTCGCTTGCCCGTGATGGGACACTGAGTTTAACGGGGAACCCGCGGTCGAGTTTCCAAGACCATAAGAAAGGGCTGCTCCATTGGATTCAAAAGCTTGGCCCTGGCCCCCTGCATCCTGAAACCTCATCCTCCTCGCCCGTGCCGAAACCGAAATTCTCGTAA 1497 46.89 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPPRNYGLKSRPQSASSAQKPNPDISKIQRNFIANKQRSLSPLPESNLSEVFKEAKSASKRFSTPTPRLRERTREFKNKLFNKDPQDSKSSTSKTSSNTSPLKLLASSKGGEKSKFRKDSSWTKYFDSGGGKVTAVETADDWSVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKLIRVPEDDDSGALASRLEKQFTREVTLLSRLHHPNVLKFVAACRNPPVYCVITEYLSQGSLRAYLLKLERQSLPLQKLIEFSLDVARGMEYIHSQGIIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSVQPDKRPDFWQIVKVLEQFEASLARDGTLSLTGNPRSSFQDHKKGLLHWIQKLGPGPLHPETSSSSPVPKPKFS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1119287 1122381 + Cp4.1LG10g04960.1 Cpe10g00193 475730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00193 498 MobiDBLite consensus disorder prediction 38 60 - -
Cpe10g00193 498 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 468 - -
Cpe10g00193 498 MobiDBLite consensus disorder prediction 482 498 - -
Cpe10g00193 498 MobiDBLite consensus disorder prediction 100 119 - -
Cpe10g00193 498 Pfam Protein tyrosine and serine/threonine kinase 191 440 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 Gene3D Phosphorylase Kinase; domain 1 172 268 - -
Cpe10g00193 498 SMART serkin_6 184 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00193 498 CDD STKc_MAP3K-like 191 440 - -
Cpe10g00193 498 MobiDBLite consensus disorder prediction 44 60 - -
Cpe10g00193 498 MobiDBLite consensus disorder prediction 479 498 - -
Cpe10g00193 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cpe10g00193 498 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 468 - -
Cpe10g00193 498 SUPERFAMILY Protein kinase-like (PK-like) 170 440 IPR011009 -
Cpe10g00193 498 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672|GO:0006468
Cpe10g00193 498 MobiDBLite consensus disorder prediction 89 151 - -
Cpe10g00193 498 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g00193 498 MobiDBLite consensus disorder prediction 120 140 - -
Cpe10g00193 498 Gene3D Transferase(Phosphotransferase) domain 1 269 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00193 Cpe-Chr10:1119287 Cpe19g00939 Cpe-Chr19:6724858 5.47E-113 dispersed
Cpe10g00193 Cpe-Chr10:1119287 Cpe19g01019 Cpe-Chr19:7105612 0 wgd
Cpe10g00193 Cpe-Chr10:1119287 Cpe20g00437 Cpe-Chr20:2510681 0 wgd
Cpe10g00193 Cpe-Chr10:1119287 Cpe09g00837 Cpe-Chr9:7723890 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62640 PF07714 PK_Tyr_Ser-Thr 2.80E-59 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00193 - - cmax:111478573 961.444