Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00216 ATGGGTGCAGCAGCCATGTCTAAGGATCTCGAAGCCGGTGGGTTCGCTACCAAGGACTACCAAGACCCACCACCAGCACCGTTGATCGACGCCGACGAGTTCACTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAACCAGTCCGACATAAAAAACGGCGGCCAAATCTGCGGCGGGGTCGGCATTCTTGGCATCGCTTGGGCATTCGGCGGCATGATTTTCGTCCTCGTTTACTGTACCGCTGGAATTTCCGGAGGGCACATTAACCCGGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCTTTGGTTAGAGCAGTTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCTTTAGTGAAATCGTTCCAGAAGGCTCATTACAGTGAGTACGGCGGTGGAGCCAATTCACTCGCCGATGGCTACAGCACCGGCACCGGCTTAGCCGCAGAAATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAATGCCAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCCGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATCTTTTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATCATACTGAGAGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGAGCAATGTCGTCCAACAGTGTCTTTGAGCGCAGAAGCAATGGTGGGTTGGCCGCCACCGCCAAGGACTACCAAGACCCGCCGCCCGCTCCGTTCATCGACGCCGGGGAGTTCACTCAGTGGTCATTTTACAGAGCTATCACCGTCGAATTCGTCGCCACGCTTCTGTTCTTGTACATTCTTGTTCTCACTGTGATTGGCTATGACACCCAGTCCGCCACCAATGTCTGCGGCGGTGTCGGCGTTTTGGGCATTGCCTGGGCCGTCGGTGGAATGATCTTCGTTCTCGTTTACTGCACCGCTGGAATTTCAGGCGAGTTTAGAGGGCATATTAACCCGGCGGTGACATTTGGGCTGTTCTTGGCTCGAAAAATCTCCCTAATCAGAGCTGTGTTTTACATTATGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCGTTGGCTAAATCATTCCAGAAGGGTTATTACGTTCGCTACAGAGGTGGAACCAATATACTCGCCGATGGGTACAGCATCACCACCGGCTTAGCCGCAGAGATCGCCGGAACTTTCATTCTTGTTTACACCGTCTTCTCCGCCACCGACCCCAAGAGAAACGCCAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGATTCGCGGTGTTTATAGTTCATTTAGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTGATCTATAACAGAACGGAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCGTTCGTCGGAGCTGCCATTGCTGCAATTTATCATCAAGTCATAATTAGAGCAGGAGCTGTTAAAGCTCTTGGATCATTCAAAACTTCCTCCGCCCTATAA 1731 52.28 MGAAAMSKDLEAGGFATKDYQDPPPAPLIDADEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQCLGAICGCALVKSFQKAHYSEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRRAMSSNSVFERRSNGGLAATAKDYQDPPPAPFIDAGEFTQWSFYRAITVEFVATLLFLYILVLTVIGYDTQSATNVCGGVGVLGIAWAVGGMIFVLVYCTAGISGEFRGHINPAVTFGLFLARKISLIRAVFYIMAQCLGAICGCALAKSFQKGYYVRYRGGTNILADGYSITTGLAAEIAGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNRTEAWDHHWIFWVGPFVGAAIAAIYHQVIIRAGAVKALGSFKTSSAL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1223766 1229506 + Cp4.1LG10g04850.1 Cpe10g00216 475753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00216 576 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cpe10g00216 576 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 285 IPR034294 -
Cpe10g00216 576 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 303 572 - -
Cpe10g00216 576 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 303 572 IPR034294 -
Cpe10g00216 576 SUPERFAMILY Aquaporin-like 33 273 IPR023271 -
Cpe10g00216 576 ProSitePatterns MIP family signature. 394 402 IPR022357 -
Cpe10g00216 576 TIGRFAM MIP: MIP family channel proteins 334 554 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 TIGRFAM MIP: MIP family channel proteins 45 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 CDD MIP 41 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 Pfam Major intrinsic protein 322 555 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 Pfam Major intrinsic protein 34 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 CDD MIP 329 558 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 Gene3D Glycerol uptake facilitator protein. 314 576 IPR023271 -
Cpe10g00216 576 Gene3D Glycerol uptake facilitator protein. 26 289 IPR023271 -
Cpe10g00216 576 SUPERFAMILY Aquaporin-like 321 560 IPR023271 -
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe10g00216 576 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 7 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00216 Cpe19g00410 CCT
Cpe10g00216 Cpe19g00410 ECH
Cpe08g01099 Cpe10g00216 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00821 Cpe-Chr5:5093243 Cpe10g00216 Cpe-Chr10:1223766 2.83E-151 dispersed
Cpe08g01099 Cpe-Chr8:8324588 Cpe10g00216 Cpe-Chr10:1223766 8.78E-137 dispersed
Cpe09g00420 Cpe-Chr9:2660647 Cpe10g00216 Cpe-Chr10:1223766 1.73E-134 dispersed
Cpe10g00212 Cpe-Chr10:1212635 Cpe10g00216 Cpe-Chr10:1223766 3.40E-138 dispersed
Cpe10g00216 Cpe-Chr10:1223766 Cpe19g00409 Cpe-Chr19:3617325 3.75E-152 dispersed
Cpe10g01037 Cpe-Chr10:6046978 Cpe10g00216 Cpe-Chr10:1223766 1.45E-11 dispersed
Cpe19g00188 Cpe-Chr19:1531992 Cpe10g00216 Cpe-Chr10:1223766 3.00E-11 dispersed
Cpe10g00214 Cpe-Chr10:1222454 Cpe10g00216 Cpe-Chr10:1223766 7.27E-42 proximal
Cpe10g00215 Cpe-Chr10:1222911 Cpe10g00216 Cpe-Chr10:1223766 7.08E-35 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00216 K09872 - csv:101215366 529.635