Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00219 ATGGATCCGAAGAAAAAGATGATTACGTTTATGGATTCCAAAGAGAAATCGAAGGAGATGGACAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCGGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCTTGTGCCTCCCCAGTTGATTTCAGGACTTGTCCGAAGCTTCCTTCATATACCCTTTGCAGAGTCTCTGCTATCAAGTTCCTTGCGGATCCTGACACCGATGAGGTCTTTGCCAAACTTAGGTTGATACCCATAAATGGAAGTGAACTAGATTTTGATGATGGAATTGGGCGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGAGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCCGTTGGATTACTCTGCTGATCCGCCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTATAGGGGGACACCTCGGCGGCATCTTTTGACCACTGGTTGGAGTAGTTTTGTTAACCATAAGAAGCTTGTTGCGGGGGATTCCATTGTGTTCTTGAGGGCTGAAAATGGTGATCTCTGCGTCGGGATTAGGCGGGCGAAAAGGGGAGCTGGAGATGGTCCAGACTCGTCGTGTGGATGGAATGGTGCAGTCCCTTATGGAGCTTTCTCTGCTAATGAAAGTCTTATGGGAAAGGGGAAAGTGAAGGCTAAATCAGTAATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCATTTGAAATAGTATTCTATCCAAGAGCTAGCACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTCGAAACCGAGGACTCGTCTCGTATTAGCTGGTTCATGGGGACCGTCAATTCGGTTCAGGTCGCTGACCCACTACGCTGGCCGGAGTCACCATGGAGGCTTCTTCTGAATGTGAAACGCGTTAGCCCGTGGTTGGTCGAATCGGTATCGAACATGTCTCCCATACACATTGCCCCATTCTCATCTCCAAGGAAAAAGCTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGCCTCCTATGCCATTGTTCTCTAGTTATCTCCACGGTTCCGGCAGCCCTTTTGGTTGTCCTCCCGACAACAACTCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTATCAGATTTTCATCTCAGTAAACTGCACTCAGGTTTGTTTCCGATTGGTTATCGATCACCCGATCCAGCTGCTGAGTCAGCTACACTTTCTTGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCCTCGAAGAAATGCGACGGCGACGATCGGCAAGAAGTCGAGCCTAACGTTGATCCAGGCCATTGTAAAGTCTTCATGGAATCAGAAGATGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACACAAAACTTGGAAACATGTTTGATATAGATAACTCAGAGACATTGAACCACGTTTTGTACCGTGATGTTTCCGGTGCTGTCAAGCACGTCGGTGACGAACAATTCAGCGACTTCATCAAAACAGCAAGAAGATTGACAATTCTATAG 1764 47.28 MDPKKKMITFMDSKEKSKEMDKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACASPVDFRTCPKLPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELDFDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGAGDGPDSSCGWNGAVPYGAFSANESLMGKGKVKAKSVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTVNSVQVADPLRWPESPWRLLLNVKRVSPWLVESVSNMSPIHIAPFSSPRKKLRYPQHPDFPLDNQPPMPLFSSYLHGSGSPFGCPPDNNSAGMQGARHAHFGLSLSDFHLSKLHSGLFPIGYRSPDPAAESATLSCNAMTEKPSMSENVSCLLTMAHSTQASKKCDGDDRQEVEPNVDPGHCKVFMESEDVGRTLDLSSLGSYEELYTKLGNMFDIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTIL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1241922 1245385 - Cp4.1LG10g04760.1 Cpe10g00219 475756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00219 587 CDD B3_DNA 125 226 IPR003340 GO:0003677
Cpe10g00219 587 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 505 587 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe10g00219 587 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Cpe10g00219 587 PANTHER AUXIN RESPONSE FACTOR 505 587 - -
Cpe10g00219 587 Pfam Auxin response factor 270 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe10g00219 587 Gene3D - 511 587 - -
Cpe10g00219 587 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 499 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe10g00219 587 SMART B3_2 126 228 IPR003340 GO:0003677
Cpe10g00219 587 PANTHER AUXIN RESPONSE FACTOR 12 499 - -
Cpe10g00219 587 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Cpe10g00219 587 ProSiteProfiles PB1 domain profile. 511 587 IPR000270 GO:0005515
Cpe10g00219 587 SUPERFAMILY DNA-binding pseudobarrel domain 121 228 IPR015300 -
Cpe10g00219 587 Gene3D - 124 228 IPR015300 -
Cpe10g00219 587 Gene3D - 307 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00219 Cpe19g00413 CCT
Cpe10g00219 Cpe19g00413 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00219 Cpe-Chr10:1241922 Cpe13g00800 Cpe-Chr13:7188933 0 dispersed
Cpe01g02236 Cpe-Chr1:19019574 Cpe10g00219 Cpe-Chr10:1241922 0 wgd
Cpe10g00219 Cpe-Chr10:1241922 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe10g00219 Cpe-Chr10:1241922 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50079 PF02362 B3 6.10E-22 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00219 - - csv:101217039 900.582