Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00244 ATGTTGACCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCTGCTCGCCGCTAGGTGCCAGTGCCGCCGCTGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGTTTAATGCTAAGTTCCTTGAAAATCCTAAATTATGGAAGGAAATTGTTACCTGTTGCAGGAAAGTGAATGCTTCCGTAACGAGAAGGCAATTGCTCCAAAGCTTAGAGAAAGACGAATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATTGGATTCGGCCAGTACGCACTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCAGTCAATCCAAAGCCCGGAACGTTACGATACGCCGTGATACAGCCTCAACCTCTCTGGATCGTCTTCCCGGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCGAGTCCGACGCATTACGGATACCGCACGAAATCGGACGGCGACGGTATATCCATCTTCGGATCGAAGGACATATGGATTGACCATTGCTCACTCTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACAATTTCAAACAATTATTTCTCACATCACGATGAGGTTATGCTTTTGGGTCACAGCGATAGCTACTTGCCGGATTCCGGAATGCAGGTAACAATAGCGTTCAACCACTTCGGCGAGAAGCTAGTTCAAAGGATGCCGCGATGCCGGCGAGGGTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGGAGCCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTGACCAAGCGGGTCGAAACATCCGAGTCCGAGTGGCGGGGTTGGAACTGGCGCTCCGACGGCGACATTCTCGTTAACGGCGCCTTCTTCGTTACCTCTGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAATCAGTCGCCCTGATCGACCAGCTCACTTGGCACGCTGGCCCGCTTGGCGTCGGCGGCAGGGATAACAATTTGGGGATGTGGACCACTGGCCCCAATGGAGGGGGAGGCTTTGTCATTGGGTCTGGTCCGGATTACACTGACGACATGTCGGAAAGCTTGTCTCGGATTGGGTCTCCTTATTTTGTCATGGTATTGTCTGTGTTGTTGTGTTCTTTTTGCGCATTGGCACTCGCATTTGTGCAATGA 1509 53.55 MLTTTCIVLLALLLPSCSPLGASAAAAALNLTLPGQHPSPELVAQEVHRFNAKFLENPKLWKEIVTCCRKVNASVTRRQLLQSLEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSVALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGGFVIGSGPDYTDDMSESLSRIGSPYFVMVLSVLLCSFCALALAFVQ 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1418792 1421906 + Cp4.1LG10g04500.1 Cpe10g00244 475781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00244 502 Pfam Pectate lyase 176 359 IPR002022 -
Cpe10g00244 502 PANTHER PECTATE LYASE 18-RELATED 3 456 IPR045032 GO:0030570
Cpe10g00244 502 PANTHER PECTATE LYASE 12-RELATED 3 456 - -
Cpe10g00244 502 SUPERFAMILY Pectin lyase-like 90 409 IPR011050 -
Cpe10g00244 502 SMART amb_all 170 367 IPR002022 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Cpe10g00244 502 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Cpe10g00244 502 Gene3D - 95 437 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01256 Cpe-Chr1:7517844 Cpe10g00244 Cpe-Chr10:1418792 0 dispersed
Cpe10g00244 Cpe-Chr10:1418792 Cpe13g00765 Cpe-Chr13:6983856 0 dispersed
Cpe01g02212 Cpe-Chr1:18815530 Cpe10g00244 Cpe-Chr10:1418792 0 wgd
Cpe10g00244 Cpe-Chr10:1418792 Cpe19g00431 Cpe-Chr19:3875886 3.24E-166 wgd
Cpe10g00244 Cpe-Chr10:1418792 Cpe09g00403 Cpe-Chr9:2530200 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00244 K01728 - csv:101203012 849.351