Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00250 ATGATGAAGCCATCCTTCCCATCGACATGCCTGTTGGCATCTCTGCTAAGCCTGCTGTTGCTTATAATCGCCCATGCACACGCCGCGGCCTCGATGGGGCATCGCCCTTACGCGAAAGCGCACAGGGAATTAGGCGCGCGGCTTGTTAAAAAGCATAACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAACGCGCTCGTGCTACCTTCTATGAAGGTGGCCCCGGAACCTTTGGTCGTGCATGTGGGTACAGCGACGTGGAAAAGGAAGGGTATGGGCTGCAGACGGCGGCATTAAGCATGGCGCTGTTTAACAACGGGCAGAAATGCGGCGCTTGCTTTGAACTCAAATGCATGGACAATCCTGATTGCAAGCCTGGGCAGCCCTCCCTCGTGGTAACCGGCACCAACCACTGTCCACCCAACTACAACGCTGCCAACGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGACATAGCCAAGCCTGTTTTCGCCAACCTTGCAGACTACAAGGCCGGCGTCATTCCCATCACTTACCGTAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGCTTCACAATCACTGGAAACCCATACTTCAACGAAGTAATGGTGTGGAACGTGGGAGGAGCTGGGGACATAACGGCTGTCCAAGTCAAGGGTCACCGTAAGCTGAAATGGACCACCCTGTCTCGTCTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGCGAGTCGCTCACCTTCAGGGTTCGAGCCAGCGATGGCAGATTCTCCACTGCATGGCATGTTGCTCCCGCCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAGAACTTTAAGTAG 858 55.13 MMKPSFPSTCLLASLLSLLLLIIAHAHAAASMGHRPYAKAHRELGARLVKKHNRPPFKPGPWKRARATFYEGGPGTFGRACGYSDVEKEGYGLQTAALSMALFNNGQKCGACFELKCMDNPDCKPGQPSLVVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRRVPCQKQGGIRFTITGNPYFNEVMVWNVGGAGDITAVQVKGHRKLKWTTLSRLWGQKWTTNAMMVGESLTFRVRASDGRFSTAWHVAPANWQFGQTFEGKNFK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1461913 1463634 + Cp4.1LG10g04490.1 Cpe10g00250 475787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00250 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 191 IPR007112 -
Cpe10g00250 285 SMART dpbb_1 95 181 IPR007112 -
Cpe10g00250 285 SUPERFAMILY Barwin-like endoglucanases 61 209 IPR036908 -
Cpe10g00250 285 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Cpe10g00250 285 Gene3D - 189 284 IPR036749 -
Cpe10g00250 285 PRINTS Expansin signature 90 104 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Cpe10g00250 285 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576
Cpe10g00250 285 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576
Cpe10g00250 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Cpe10g00250 285 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cpe10g00250 285 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Cpe10g00250 285 PANTHER EXPANSIN-A32 13 285 - -
Cpe10g00250 285 PANTHER EXPANSIN-A15 13 285 IPR002963 GO:0009664
Cpe10g00250 285 Pfam Lytic transglycolase 95 181 IPR009009 -
Cpe10g00250 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Cpe10g00250 285 Gene3D - 46 187 IPR036908 -
Cpe10g00250 285 SUPERFAMILY PHL pollen allergen 188 281 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00250 Cpe-Chr10:1461913 Cpe16g00619 Cpe-Chr16:6736333 9.52E-102 dispersed
Cpe10g00250 Cpe-Chr10:1461913 Cpe05g00925 Cpe-Chr5:6080077 4.10E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00250 - - mcha:111013610 455.677