Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00253 ATGGAATCCATTCTTCTCACCGCCGCCACTTCAAACCTCCCGCTGCCTCGAAACTCTTCCCTTTCCCCACTCTCTTTCTCCTCCTCCCTCCCGAATCAGGTGAGCACCAAGGTCGACATCAGGCGAACCAACAAAGGTACGACCAAGGCCCCGCGTATCGTGGCCTCCTCGTCGGGGTCCAAAGGAAGGGCGGGTAAAGGGGTGTCTGCCAATGTAGCAGTTGACGGTTCGGTTGCGGCGGTTGCGGCGGAGGGTGTGAAGGACGTGTCGTGGAAGGAATTACAGTACGAGGAAGGGTCAACTGGGCACAGGCAGCCCCTTCCCACTAACCCGGATACTGAGAAGCAGATGGAATATATTACAAAAATATTGGGCTCAAATGTGTACGATGTGGCTATTGAAACCCCATTGCAGCTTGCTCCCCTCTTGTCTACTCAATTGGGTGTCAATCTCTGGCTCAAGAGGGAGGATTCACAGCAGGTGTTCTCATTCAAGATTCGAGGCGCTTACAATATGATTTCCCAACTTCCTGAAGAACAATTGAAAAAGGGGATTATCTGTGCGTCAGCTGGGAATCATGCCCAGGGAGTTGCATTATCTGGGCAGCGATTGAAAACTAAAGCCCACATTGTTATGCCAACAACTACTCCTCAAATCAAGATAGATGCAGTTGAGAGATTGGGTGGAATTGTTGATCTGAAAGGCAATACTTTTGATGAAGCGCAAAAAATAGCTAAGGAGAGGAGCGAAAAGGAAGGCCTCACATTCATACCTCCTTTTGATGACAAAGATGTTATAGCAGGGCAAGGTACAGTCGGTATGGAAATTGGGCGTCAAATAAGGGGCAAAATCCATGCTATTTTTGTTCCTATTGGTGGTGGTGGTCTCGCTTCTGGGATTGTCTCTTTTTACAAGCTGGTTTATCCTGATGTAAAGGTATTTGGGGTGGAACCAAATGATCAGAACTCCATGGCGCAGGCATTGTATCGTGGGGAGATAGTGAATGTGACAGATATTGGGCATTTTGCAGATGGAGTAGCTGTTCAACAAGTTGGCGAAGAGACATTTCGAATCTGCTATGAACTCCTGGATGATGTGATTCTTGTTAAAAAGGAATCAATATCTGCGGCCATAAAGGACATGTTTAACGACGGCAGGAACATCTTAGAACCTTCCGGTGCTCTTTCCATTGCTGCAGCCAAGGCCTACTGCGAGTATAACAACATTAAGGGAGTAAATGTTGTGGCTGTTACTAGTGGTGCAAATATGAACTTTGACCAACTGGGACAAATCTCTGATCTTGCCAATATTGATCAGTCTATTCTCGCAACTATGTTGCCAGAAACACCTGGAAGCTTAAAACAACTTACCGACCTGATCGCCGATTTGGGTGTCACCGTTACAGAAATGACTTATAGATTTAGCTCTGGCTCAACAGATGCTCTTGTTGTTTATAAAGTTAAAGCGGTAGATTCAGCACTTGAAACTTTGGTGAGACAGTTGAACTTTTTTGGGTTCAAAACTTACACTTTATCCGATAATGAAGTTGTTAGAAACCATCTCCGTTACATGATGGGAGGCAGACAAAACGTTGAAAACGAAACTCTCTTCCGTTTTACTTTCCCAGAAAAGGTTGGTGCTCTAAAGCACTTCCTCAAAGACTTTCAGCCAAACTGGAACGTTTCTTTGTTCCACCATCGTCACCAGGGTATTCTTACTTCAGATGTGTTGATTGGAGTCCAACTTGAGAAATCAGAGGAGAAAAAGTTTCATGAGTATGCAAAGAAAGTTGGGTATCAATATGAGGTAATATCTCAAGATGATTCAGCCCAAGTTCAAATGGTTGCAGCGGTTCCGGAGGAGGATAAGGGACATTCGTGGAAGGACCTTGAGGTCGAGGAAGGGGTAATCGTGGAAAGGAAATTCCCTCCCGCCAACCCGGATACTAAGAGGCAGATGGAGTATCTTCAAAAAATATTAGGTTCAAATGTGTACGATGTGGCTATTGAAACCCCATTGCAGCTTGCTCCCCTCTTGTCTACTCGAATGGGGGTCAATCTGTGGGTCAAGAGGGAGGATGCACAGCAGGTGTTCTCATTCAAGATTCGAGGAGCGTATAATATGATTTCCCTACTCCCCAAACAAAAATTGAAAAAGGGGGTTATCTGTGCGTCCGCTGGGAATCATGCCCAGGGAGTTGCATTAGCTGGTCAGCGATTGAAAACTGAAGCCCACATTGTTATGCCAACAACTACTCCTCAAATTAAGATAGATGCAGTTGAGGACTTGGGTGGAATTGTCGATCTGTTTGGCAATGATTTTAATGAAGCGCAAGAAAGAGCTCAAGAGCGGAGCAAAGAGGAAGACCTCACAATCATACCTCCTTTTGATGACGAAGATGTTATAGCAGGCCAAGGTACAATTGGGATGGAAATTGGGCGTCAAATAAGGGGCAAAATCCATGCTATTTTTGTTCCTGTTGGGGGTGGTGGCCTCGCTGCTGGTATTGTCTCTTTTTACAAGCTGGTTTATCCTGATGTAAAGGTATATGGGGTGGAACCAAATGATCACAACTCCATGGCGCTGGCATTGCATCTTGGGAAGGTAGTGTTTGTGGGCGATATTGGAAATTTTGCAGATGGAGTAGCTGTTAGACAAGTGGGGAACGAGACTTTTCGAATCTGCAATGAACTCCTGGATGGTGTAATTCTTGTTAAAAAAGAATCAATAGCTTCCGCTTTGAAGGACATGTTTAACGACGGCAGGAACATCTTAGAACCTTCCGGTGCTCTTTCCATTGCTGGAGCCGTGGCCTACTGCAGGTATCATGGTATTAGGAGAGAAAATGTTGTGGCTGTTACTAGTGGTGCAAATATGAACTTTGACCAATTGGGTCATATTGCCGATCTTGCCAATTCTGATCAGTCTATTTTGGCAAGTTGGTTGCCAGAGTGCCCAAAAAGCTTAGGAAGACTTACCGACGTGGTCACCCGAATGGATTTCAGCATTACAGAAATGACTTATAGATTTAGCTCTGGCTCAGTAGACGCTCTGCTTGTTTATAAAGTTAGAGCAGTCAAGGAAGACCTTAAAATTGACACTTTGGTGGCAGAGTTGATTTCTTGTGGGTTTAAAACTTACACTTTATCAGATAATGAAGTTGTTAGAAACCATCTCCGTTTCATGGTGGGAGGCAGACAAAACGTTGAAAACGAAACTCTCTTCCGTTTTACTTTCCCAGAAAAGGCAGGTGCTCTCAACCACTTCCTCCAAGGCTTCCAACCCAACTGGAACATTTCTTTGTTGCACCATCGTGATCAGGGTATTATTACTTCAGAAGTGTTAATTGGAATCCAGCTTGAGAAATCAGAGGAGAAAAAGTTTGATGAGTATGCGAAGGAAGTTGGGTATCAATATGAGGCAATATCTCCAGATGATTCTGCCCATCTTGCAGCTGCAATGAACGTACTTCTTAACGCGCCCACTTCGCACCCGCTCTCTCGAAAATGGTCCCTTTTATCTCCAGCATTTTTCTTGAATGGGACATCTATTCCGATCGATGACAATCGAAACGGAATTAGAGTTACCAGGGTGCCATTCATCCAAGCCACGCTTTCAAAACACACGGTTGAGAACCTTCCCAATTCTGTGTCGAACACTGCGGTTGTGGCTCTTGAAGACGCATTGGTGGCCGTCCCTTTGCCTCCTCGCAAAAGGGTGTTGGCGGATTCGCTGCAATTCCCGCCTGGGTATCTCGGTGCCGTTCCGGACCGTTTGGGGTCTGATGATGAAGAGGATAGTCTCGATGCGATGGAGTATTTGACTAGAATTTTGGGTTCGAAGGTGTATGATGTCGCTATTGAATCGCCGTTGCAGCTTGCGCCCATGTTGTCTGAGCGTTTGGGGGTCAATATCTGGCTCAAGAGGGAGGACTTGCAACCCGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAAAGAACGGTTGGAAAGAGGAGTTATATGCTCATCAGCTGGAAATCATGCTCAAGGGGTTGCATTAGCTGCTAGGCGATTAAGATGTGATGCTGTGATTGCTATGCCCGTTACTACACCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCAACTGTTGTTCTTGTTGGCGATTCATACGACGAGGCGCAAGCGTATGCTAAAAAGCGGAGCGTAGACGAAGGCCGCACATTCATACCTCCTTTTGATCACCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGCCAAATGAAGAGCAAATTGCATGCTATTTTCGTGCCGGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAGATTATTGGGGTGGAGCCGTCTGATGCAAATGCTATGGCATTATCATTATGTCATGGTCAAAGAATAATATTAGAAAAGGCTGGAGGCTTTGCTGATGGTGTAGCAGTTAAGGAAGTGGGTGAAGAGACCTTTCGCCTTTGCAAAGGTCTCATGGATGGCGTAGTTCTTGTTGGCCGTGATGCTATATGTGCCTCCATAAAGGATATGTTTGAGGAGAAGAGAAGCATTTTGGAACCTGCAGGCGCTCTGTCTCTTGCTGGAGCAGAGGCATACTGCAAATATTATGGGTTGAAGGGAGAAAACGTTGTGGTAATAACAAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACTGAACTTGCCAATGTTGGTCGTGAACAAGAGGCTGTGCTCGTGACTAAATTGCCGGAGAAACCTGGAAGCTTTAAAAGATTTTGTGAACTGATTGGGGCTATGAACATTACAGAGTTCAAGTATAGATATAATTCTGAAGAAGAAGCGGTTGTTCTTTATAGTGTTGGTATGCATATGCCTTCAGAACTGGAAGAAATGATGAACCGGATGAATTCTTCTCAGCTTGAAACTTATAATCTCACAAACAATGATCTTGTAAAGGATCACCTGCGTTACTTGATGGGAGGCAGATCAAATGTTGAAAACGAGGTTCTTTGTCGTTTTATCTTCCCAGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTTAGCCCTCGCTGGAACATTAGTTTGTTTCACTACCATGGGCAGGGCGAAACAGGTGCAAATATATTCGTTGGGCTTCAGATTGAGAAACCCGAGATGGGCGAATTCCATGAACGTGCTAGGAGGGTCGGGTACGATTACGTTGTCGTAACTGATGATGGTATCTTTCAACTTCTAATGCATCATAGACCAACCCACAAGCCTCTAAATTGA 5340 45.04 MESILLTAATSNLPLPRNSSLSPLSFSSSLPNQVSTKVDIRRTNKGTTKAPRIVASSSGSKGRAGKGVSANVAVDGSVAAVAAEGVKDVSWKELQYEEGSTGHRQPLPTNPDTEKQMEYITKILGSNVYDVAIETPLQLAPLLSTQLGVNLWLKREDSQQVFSFKIRGAYNMISQLPEEQLKKGIICASAGNHAQGVALSGQRLKTKAHIVMPTTTPQIKIDAVERLGGIVDLKGNTFDEAQKIAKERSEKEGLTFIPPFDDKDVIAGQGTVGMEIGRQIRGKIHAIFVPIGGGGLASGIVSFYKLVYPDVKVFGVEPNDQNSMAQALYRGEIVNVTDIGHFADGVAVQQVGEETFRICYELLDDVILVKKESISAAIKDMFNDGRNILEPSGALSIAAAKAYCEYNNIKGVNVVAVTSGANMNFDQLGQISDLANIDQSILATMLPETPGSLKQLTDLIADLGVTVTEMTYRFSSGSTDALVVYKVKAVDSALETLVRQLNFFGFKTYTLSDNEVVRNHLRYMMGGRQNVENETLFRFTFPEKVGALKHFLKDFQPNWNVSLFHHRHQGILTSDVLIGVQLEKSEEKKFHEYAKKVGYQYEVISQDDSAQVQMVAAVPEEDKGHSWKDLEVEEGVIVERKFPPANPDTKRQMEYLQKILGSNVYDVAIETPLQLAPLLSTRMGVNLWVKREDAQQVFSFKIRGAYNMISLLPKQKLKKGVICASAGNHAQGVALAGQRLKTEAHIVMPTTTPQIKIDAVEDLGGIVDLFGNDFNEAQERAQERSKEEDLTIIPPFDDEDVIAGQGTIGMEIGRQIRGKIHAIFVPVGGGGLAAGIVSFYKLVYPDVKVYGVEPNDHNSMALALHLGKVVFVGDIGNFADGVAVRQVGNETFRICNELLDGVILVKKESIASALKDMFNDGRNILEPSGALSIAGAVAYCRYHGIRRENVVAVTSGANMNFDQLGHIADLANSDQSILASWLPECPKSLGRLTDVVTRMDFSITEMTYRFSSGSVDALLVYKVRAVKEDLKIDTLVAELISCGFKTYTLSDNEVVRNHLRFMVGGRQNVENETLFRFTFPEKAGALNHFLQGFQPNWNISLLHHRDQGIITSEVLIGIQLEKSEEKKFDEYAKEVGYQYEAISPDDSAHLAAAMNVLLNAPTSHPLSRKWSLLSPAFFLNGTSIPIDDNRNGIRVTRVPFIQATLSKHTVENLPNSVSNTAVVALEDALVAVPLPPRKRVLADSLQFPPGYLGAVPDRLGSDDEEDSLDAMEYLTRILGSKVYDVAIESPLQLAPMLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKERLERGVICSSAGNHAQGVALAARRLRCDAVIAMPVTTPEIKWQSVQKLGATVVLVGDSYDEAQAYAKKRSVDEGRTFIPPFDHPDVIAGQGTVGMEIVRQMKSKLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRIILEKAGGFADGVAVKEVGEETFRLCKGLMDGVVLVGRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREQEAVLVTKLPEKPGSFKRFCELIGAMNITEFKYRYNSEEEAVVLYSVGMHMPSELEEMMNRMNSSQLETYNLTNNDLVKDHLRYLMGGRSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYHGQGETGANIFVGLQIEKPEMGEFHERARRVGYDYVVVTDDGIFQLLMHHRPTHKPLN 1779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1514548 1529836 + Cp4.1LG10g04350.1 Cpe10g00253 475790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00253 1779 CDD Thr-dehyd 656 960 - -
Cpe10g00253 1779 SUPERFAMILY ACT-like 1677 1769 IPR045865 -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL 648 1146 - -
Cpe10g00253 1779 SUPERFAMILY ACT-like 975 1063 IPR045865 -
Cpe10g00253 1779 CDD Thr-dehyd 1274 1578 - -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL 82 613 - -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL 1228 1770 - -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 648 1146 - -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 1228 1770 - -
Cpe10g00253 1779 ProSiteProfiles ACT-like domain profile. 440 513 IPR001721 -
Cpe10g00253 1779 SUPERFAMILY ACT-like 440 525 IPR045865 -
Cpe10g00253 1779 Gene3D - 1290 1568 IPR036052 -
Cpe10g00253 1779 Gene3D Biosynthetic Threonine Deaminase; Domain 3 439 614 IPR038110 -
Cpe10g00253 1779 Gene3D Biosynthetic Threonine Deaminase; Domain 3 975 1150 IPR038110 -
Cpe10g00253 1779 Gene3D Biosynthetic Threonine Deaminase; Domain 3 1596 1770 IPR038110 -
Cpe10g00253 1779 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 82 613 - -
Cpe10g00253 1779 ProSiteProfiles ACT-like domain profile. 1597 1668 IPR001721 -
Cpe10g00253 1779 SUPERFAMILY ACT-like 1060 1149 IPR045865 -
Cpe10g00253 1779 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 692 705 IPR000634 GO:0006520|GO:0030170
Cpe10g00253 1779 ProSiteProfiles ACT-like domain profile. 1073 1144 IPR001721 -
Cpe10g00253 1779 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 1272 1623 IPR036052 -
Cpe10g00253 1779 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 156 169 IPR000634 GO:0006520|GO:0030170
Cpe10g00253 1779 Pfam Pyridoxal-phosphate dependent enzyme 1286 1574 IPR001926 -
Cpe10g00253 1779 Pfam Pyridoxal-phosphate dependent enzyme 667 956 IPR001926 -
Cpe10g00253 1779 Pfam Pyridoxal-phosphate dependent enzyme 131 420 IPR001926 -
Cpe10g00253 1779 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 663 965 IPR036052 -
Cpe10g00253 1779 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 1310 1323 IPR000634 GO:0006520|GO:0030170
Cpe10g00253 1779 CDD ACT_ThrD-I_2 1689 1769 - -
Cpe10g00253 1779 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 118 609 IPR005787 GO:0004794|GO:0009097
Cpe10g00253 1779 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 1272 1768 IPR005787 GO:0004794|GO:0009097
Cpe10g00253 1779 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 654 1145 IPR005787 GO:0004794|GO:0009097
Cpe10g00253 1779 ProSiteProfiles ACT-like domain profile. 1690 1761 IPR001721 -
Cpe10g00253 1779 Gene3D - 135 414 IPR036052 -
Cpe10g00253 1779 SUPERFAMILY ACT-like 1595 1679 IPR045865 -
Cpe10g00253 1779 SUPERFAMILY ACT-like 522 612 IPR045865 -
Cpe10g00253 1779 Gene3D - 671 950 IPR036052 -
Cpe10g00253 1779 Pfam C-terminal regulatory domain of Threonine dehydratase 529 611 IPR001721 -
Cpe10g00253 1779 Pfam C-terminal regulatory domain of Threonine dehydratase 438 521 IPR001721 -
Cpe10g00253 1779 Pfam C-terminal regulatory domain of Threonine dehydratase 1587 1676 IPR001721 -
Cpe10g00253 1779 Pfam C-terminal regulatory domain of Threonine dehydratase 1065 1148 IPR001721 -
Cpe10g00253 1779 Pfam C-terminal regulatory domain of Threonine dehydratase 1682 1767 IPR001721 -
Cpe10g00253 1779 MobiDBLite consensus disorder prediction 44 67 - -
Cpe10g00253 1779 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 117 466 IPR036052 -
Cpe10g00253 1779 ProSiteProfiles ACT-like domain profile. 535 606 IPR001721 -
Cpe10g00253 1779 CDD Thr-dehyd 130 424 - -
Cpe10g00253 1779 Gene3D - 1322 1413 IPR036052 -
Cpe10g00253 1779 Gene3D - 704 795 IPR036052 -
Cpe10g00253 1779 Gene3D - 168 259 IPR036052 -
Cpe10g00253 1779 CDD ACT_ThrD-I_1 1596 1679 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00253 Cpe19g00442 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00324 Cpe-Chr5:1810926 Cpe10g00253 Cpe-Chr10:1514548 1.32E-31 transposed
Cpe10g00253 Cpe-Chr10:1514548 Cpe19g00442 Cpe-Chr19:3934535 1.80E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00253 K01754 - csv:101205909 1066.99