Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00254 ATGGCAGCCATTGTTCCGCACTCTGCAAACGCCATTTCTGCAGCTTCTCTTCTTCCTTCCACCATCCTTTTCCGCTTTCCTTCTATGCCCATTAATTCTTCACCTTCAACGCCACCGCCGCCACTTTTATCCAAAACTTCTTTATCTCTCTGTAACCCAAAGCCTTGTTACCTCCCACTCAATTCCACATCTCCGACCCATTTCCTAGCCTGCGCACAATCCGCTGTGTCAATTTCAGAACCCCTTTTCGCTTCACGCTCTGTATATAGCTCTACCTCTCCAATTACTTCCGGCTTCGATTTGCTTCGCTTATCCACTCGCTATGGTGACGCTGACCTCGCCAGAGCTGTTCATGCTTGTTTTCTCAAGCTCGAGGAAGATGTTTATCTGGGTAATGCTCTAATTGCTGCTTATCTCAGGTTGGGGCTTGTTCGAGATGCTGATAAAGTCTTTTCTGGCCTTTCGTGTCCTAATGTGGTGTCTTATTCGGCGATGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAAGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCGGGTATTGAGCCGAATGAATACACTTTTGTTGCAATTTTGACTGCTTGCATTCGAAACATGGATTATCAATTAGGTTCTCAAATTCATGATATTATCATCAAATTGGGGTACCTGAATTGTGTTTTCATTTGCAATGCACTTTTGGGATTCTATAGTAAGTGTGGGTTTTTGGAACTTGTACTTAGATTGTTCGACGAAATGCCTGAGAGAGACATTACTTCGTGGAATACTGTTATCTCTAGTTTGGTGAATGAGTTCAGGTATGATGAAGCGTTCGATTACTTTCGTGTTTTGGCTGGACTTTCTAGGAATGGCGACGGGTCGAGAGCTCTGGAGCTTTTCATCGAAATGTTGGATGAGGGCATGGAAATATCAGATTGCACATTGACTAGCATCATCAATGCTTGTGGGTTGCTCAAGAATTTGAAACTCAGCCAGCAGATTCAAGGCTTCATCATCAAGTTTGGGATTTTGTCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTTAGGGAGGATGGCGGATGCAGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAACAAGCAACTTAATGAAGCAATCTCTCTCTTTCACTCTGGTCAATCTGAAGGAGCTATTGTCATGGATGAAGTTGTGTCAACGTCAATACTCTCTCTTTGTGGAAGTATA 1293 43.0 MAAIVPHSANAISAASLLPSTILFRFPSMPINSSPSTPPPPLLSKTSLSLCNPKPCYLPLNSTSPTHFLACAQSAVSISEPLFASRSVYSSTSPITSGFDLLRLSTRYGDADLARAVHACFLKLEEDVYLGNALIAAYLRLGLVRDADKVFSGLSCPNVVSYSAMISGFSKSNREDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQIHDIIIKLGYLNCVFICNALLGFYSKCGFLELVLRLFDEMPERDITSWNTVISSLVNEFRYDEAFDYFRVLAGLSRNGDGSRALELFIEMLDEGMEISDCTLTSIINACGLLKNLKLSQQIQGFIIKFGILSNSCIETALVDMYTRLGRMADAEKMFHQRSLENDYTAMLTSMICGYARNKQLNEAISLFHSGQSEGAIVMDEVVSTSILSLCGSI 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1530242 1531876 + Cp4.1LG10g04360.1 Cpe10g00254 475791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00254 431 Pfam PPR repeat 385 408 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat 262 284 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat 286 309 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat 132 152 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat 231 260 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat 353 373 IPR002885 -
Cpe10g00254 431 Pfam PPR repeat family 157 205 IPR002885 -
Cpe10g00254 431 PANTHER - 100 284 - -
Cpe10g00254 431 PANTHER - 285 430 - -
Cpe10g00254 431 PANTHER - 100 284 - -
Cpe10g00254 431 TIGRFAM PPR: pentatricopeptide repeat domain 160 194 IPR002885 -
Cpe10g00254 431 TIGRFAM PPR: pentatricopeptide repeat domain 231 260 IPR002885 -
Cpe10g00254 431 TIGRFAM PPR: pentatricopeptide repeat domain 262 284 IPR002885 -
Cpe10g00254 431 TIGRFAM PPR: pentatricopeptide repeat domain 285 313 IPR002885 -
Cpe10g00254 431 TIGRFAM PPR: pentatricopeptide repeat domain 385 407 IPR002885 -
Cpe10g00254 431 Gene3D Tetratricopeptide repeat domain 210 285 IPR011990 GO:0005515
Cpe10g00254 431 Gene3D Tetratricopeptide repeat domain 286 431 IPR011990 GO:0005515
Cpe10g00254 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Cpe10g00254 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Cpe10g00254 431 PANTHER - 285 430 - -
Cpe10g00254 431 Gene3D Tetratricopeptide repeat domain 83 209 IPR011990 GO:0005515
Cpe10g00254 431 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00254 Cpe-Chr10:1530242 Cpe08g01246 Cpe-Chr8:9019319 3.14E-06 dispersed
Cpe10g00254 Cpe-Chr10:1530242 Cpe12g01030 Cpe-Chr12:8591984 9.53E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00254 - - csv:101205681 449.129