Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00277 ATGGCGGAAGAGCACCGATGCCAAGCACCTGAAGGCCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGCCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCACCCTCCTCTTCCTCAATCGATCCTCCTCCCGTTCCTCCTGTTGTCGCCGAGTCCTCGCCGGACGCCACCACAGAACTGACCATCCCCGCCCTTGCGGCGGTCGGATCTGAGGCTACGAACCAACCGAACCCGAACCCGAACCGTTGTTCATCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACTACCTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGGTGCACCTTCGATTTCAAGTCAATCGGAAGGGAGGAGATCGCTAGAGCGAACCCCATCGTCAAAGCCGATAAACTGGAGAGGATTTGA 519 56.07 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSSPSPSSSSIDPPPVPPVVAESSPDATTELTIPALAAVGSEATNQPNPNPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPIVKADKLERI 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1643495 1644013 + Cp4.1LG10g04270.1 Cpe10g00277 475814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00277 172 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cpe10g00277 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Cpe10g00277 172 PANTHER BNAC06G14100D PROTEIN 1 172 - -
Cpe10g00277 172 MobiDBLite consensus disorder prediction 46 86 - -
Cpe10g00277 172 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cpe10g00277 172 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cpe10g00277 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Cpe10g00277 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cpe10g00277 172 MobiDBLite consensus disorder prediction 48 66 - -
Cpe10g00277 172 Gene3D - 1 71 - -
Cpe10g00277 172 Gene3D - 91 168 IPR035896 -
Cpe10g00277 172 SUPERFAMILY AN1-like Zinc finger 103 167 IPR035896 -
Cpe10g00277 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Cpe10g00277 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00277 Cpe-Chr10:1643495 Cpe16g00809 Cpe-Chr16:7859759 1.80E-58 dispersed
Cpe10g00277 Cpe-Chr10:1643495 Cpe19g00465 Cpe-Chr19:4108060 4.59E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00277 - - csv:101211758 293.893