Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00310 ATGCCGAACCCTATTCCTCTTCTTCCTCGGCTTTTCATCCCATCTTCCATCTTCCATCTGCAAATCCTCTGTATTCGTTTCCTCTTGGCCTTTGGATCCTCCATGCGTGGCGGCTCTCGAGCTCTGAACAGGTCGGAGCCACTGCCCCACTCACAAACTGCTCAGATCCTGCCGCCTCTTAAGCGTCAGTTAGCTTTCGAGTCGAATAAGCCGCTGCGTGCTTCTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGGTGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCAAGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACACCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTAGCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAAAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTGCATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATCGGGGAGAGTAGTAGAGACGAAATAGAGCCTCGAGCTCACCTGTCCCAATACAGCAGTAGCTGTGATGTGATTGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTGTCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCTGATGTCAGTGCCCAAAGGCCAAGACCAGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGAAATAGAAACAAACTTTTGTAAGGTTGCAGATGGGCAGACGCATGTAAGATCGGTTTCCAGACATTATTAG 1536 42.12 MPNPIPLLPRLFIPSSIFHLQILCIRFLLAFGSSMRGGSRALNRSEPLPHSQTAQILPPLKRQLAFESNKPLRASSNSFDQEPDSIAVKPLKPKQTGVMYTNVVESNDCIQDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTSIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIGESSRDEIEPRAHLSQYSSSCDVIGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISDVSAQRPRPGSPHSETVEAPSDEIETNFCKVADGQTHVRSVSRHY 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1803394 1809770 - Cp4.1LG10g03730.1 Cpe10g00310 475847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00310 511 SUPERFAMILY Winged helix DNA-binding domain 168 231 IPR036390 -
Cpe10g00310 511 CDD E2F_DD 249 350 IPR032198 GO:0046983
Cpe10g00310 511 Pfam E2F/DP family winged-helix DNA-binding domain 170 233 IPR003316 GO:0005667|GO:0006355
Cpe10g00310 511 Gene3D - 240 350 - -
Cpe10g00310 511 PANTHER TRANSCRIPTION FACTOR E2FB 60 485 - -
Cpe10g00310 511 Coils Coil 253 280 - -
Cpe10g00310 511 Pfam E2F transcription factor CC-MB domain 249 349 IPR032198 GO:0046983
Cpe10g00310 511 MobiDBLite consensus disorder prediction 121 154 - -
Cpe10g00310 511 PANTHER TRANSCRIPTION FACTOR E2F 60 485 IPR015633 GO:0000978|GO:0006357
Cpe10g00310 511 SMART E2F_TDP_2 168 233 IPR003316 GO:0005667|GO:0006355
Cpe10g00310 511 Gene3D - 162 236 IPR036388 -
Cpe10g00310 511 SUPERFAMILY E2F-DP heterodimerization region 247 350 IPR037241 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00310 Cpe19g00497 CCT
Cpe10g00310 Cpe19g00497 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00398 Cpe-Chr5:2254187 Cpe10g00310 Cpe-Chr10:1803394 8.15E-144 dispersed
Cpe10g00310 Cpe-Chr10:1803394 Cpe11g00250 Cpe-Chr11:1356006 3.11E-72 dispersed
Cpe10g00310 Cpe-Chr10:1803394 Cpe16g00820 Cpe-Chr16:7906566 7.97E-147 wgd
Cpe10g00310 Cpe-Chr10:1803394 Cpe19g00497 Cpe-Chr19:4261540 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50086 PF16421 E2F_CC-MB 2.50E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00310 K06620 - csv:101212480 698.738