Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe10g00317 | ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAACGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTCAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA | 516 | 54.65 | MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1843894 | 1844409 | + | Cp4.1LG10g03770.1 | Cpe10g00317 | 475854 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe10g00317 | 171 | SUPERFAMILY | RING/U-box | 82 | 153 | - | - | |
| Cpe10g00317 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
| Cpe10g00317 | 171 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 1 | 170 | - | - | |
| Cpe10g00317 | 171 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 170 | IPR045899 | - | |
| Cpe10g00317 | 171 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
| Cpe10g00317 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 152 | IPR013083 | - | |
| Cpe10g00317 | 171 | CDD | RING-H2_PA-TM-RING | 105 | 148 | - | - | |
| Cpe10g00317 | 171 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00560 | Cpe-Chr8:3676698 | Cpe10g00317 | Cpe-Chr10:1843894 | 7.15E-36 | dispersed | |
| Cpe10g00317 | Cpe-Chr10:1843894 | Cpe11g00408 | Cpe-Chr11:2259859 | 3.13E-39 | dispersed | |
| Cpe10g00317 | Cpe-Chr10:1843894 | Cpe19g00504 | Cpe-Chr19:4306471 | 3.97E-87 | wgd | |
| Cpe10g00317 | Cpe-Chr10:1843894 | Cpe03g00321 | Cpe-Chr3:1681697 | 7.71E-59 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe10g00317 | - | - | csv:101218618 | 273.092 |