Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00321 GAAGCGGGAAAGGTATCGAAATCCATCGCATGTAGTATTCAAACACAAGACCAACAAAACCAAACTCCATTTCCAAAACCCTCTGTCGGATTTGTTCCGCCGGCGTCCAGAATCTCTCCGGCAGAAGAAACGCTAATCCAGTTCAACTCAGGCATGGCCGATTCCACGGCCAGTAGGAAGAAACCTCTCAGCTTGAACGATCGTCATTACCGCCTCCTTCAGGATCTTTCTGCTCCACCCAAACCCTCTCTGGCAACCGCTCGTGATCAGAGGGCAGGAGACGAAGATGAAAAGCCCTCGAGAATCGAACTTGAGAATCAACGTCGCCTCAGTGAAGTATCGACTAATGTTGACGAACTTCATGATAATAGTATTCCGCAGTCTTCAGGTGTTAATGTGGACGAACAGCCGAGGAAGGTTAAGATTGGTGGCCGACGCCGTCTGTGCAAACTTTCGTCCCGAGATGATGGTTATGTGGATAATCCAGTGGGGTTTGATTCCAATGAACCCAATTTTTCTGGTATTACAGATTTTGATTCTCCTTCTCCCCCACCTCCACCGCACTTGGATCATCGCGATAACAAGGAAAGTGATATCAGGGATATTCTGAATGACTTGAGCACGAAGCTTGAGCTTTTGTCTGTCGAGAAAAAGCGTGAAAAACCAAGAAAATTTGATTCTCTTGAAAACTTATCTGCTTCTTATTGTGGAAAAGGGATCGAGGAAGCAAGTGAAGCCGATGAACGTGAGGTTGATAGTCTGAAGTTCTCCACCAACCCATCTAATTCCTTGTTAGGTGAAAATGCAAAAGTTGAGAATGTTGTTAAGACTCTTAACGACGGTTTGAGTGGTGAGTATGGAGTAGAAATTCCCCCAAATAAGGTGAAGGTCGATGTGTTTTACAAGGGAACTCATGAAGTTGATACGTGCACAGGGAGTGAACAACTTCTAAATCTAGAATATGGAAACAATAAACATCACGAAGGACGAGATAAATACACGCATCAGGATGTCCAAAGGTCATATAATTCCCTAGGAAAAACTCCTGCGTCGATAGACGAAGGAGAGGTAGACCTTGAGGATGATTGCGTAGTTCTAAATCGTGAAACCAGGAATTTTAATGAAGTGAGAAGGCGGCATGACAAATATGAAAAGAAGAGTGAGGATTCTGATGGGATTGACATGTTTGATAAATCTGCTGAGGATTTTATATTGGAGGGAAAAAGCTCCACTGGTCACAAGTCTGCTTTCAAATTGCAAGGTAGAATTGCAAAGATGCTGTATCCACATCAGCGTGAAGGGTTGCGTTGGCTGTGGTCTCTACATTGTCGGGGTAAGGGTGGAATCTTAGGGGATGACATGGGTTTAGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTTTTTTATTCGCGTTTAATAAAGAGGGTCTTGGTTGTGGCTCCTAAAACTCTCCTGCCCCATTGGATTAAGGAGTTAGCTGTTGTGGGTCTTTCTGAGAAGACGAGAGAATACTATGGGACGTCGGCTAAACTTCGACAGTATGAGCTTAATTATATTCTCCAGGATAAAGGTGTTCTTCTGACGACTTATGATATTGTAAGGAATAATTCAAAGTCTTTACAAGGAAACAGCTTCTTTGATGATGAAGAAACTGAGGATGGAACAACATGGGATTATATGATCCTTGATGAGGGTCATCTTATAAAGAATCCTAGCACTCAAAGAGCCAAAAGTTTGCTTGAAATTCCTAGTGCTCATCGCATAATTATAAGTGGCACACCATTGCAAAACAATTTGAAGGAACTGTGGGCCCTGTTTAATTTTTGCTGTCCTGACCTATTGGGTGACAAGAAATGGTTTAAGGAGTACTATGAGTGTGCAATTCTTCGTGGAAATGACAAAAAGGCTTCTGAAAGAGATAAGCGTGTTGGTTCAATGGCTGCAAAGGAGTTACGGGAACGTATCCAACCCTACTTTTTGCGTCGTATGAAGAGTGAAGTGTTTAACGAGGATAATGATCAAGCTGCTACCAAACTCTCTAAAAAGAATGACATTATTGTTTGGCTCAAATTGACTAGTTGTCAGCGAAAACTTTATGAAGCTTTTTTGAAGAGTGAATTGGTACTTTCAGCATTTGATGGCTCACCATTGGCTGCTCTTACGATTCTTAAGAAAATATGCGATCATCCACTTCTTTTGACGAAAAGAGCAGCTGAAGATCTATTGGAAGGAATGGAAACTGTGCTAAGCCCAGAAGATGCTGGTGTAGCAGAGAAGCTGGCCATGCATTTAGCAAATGTGGCTGATAGGGATGATTATGAAGTGTATAACGACAATGTCTCTTGCAAAATATCCTTCATAATGTCTTTATTGGATAATTTGATCCCGAAGGGGCATAATGTTCTAATCTTCTCTCAAACTCGCAAGATGCTCAATCTTATTGAGGAATCACTATTATCCAATGATTATGAGTTCTTGCGAATTGACGGTACTACAAAAGCCACCGACAGAGTAAAGATTGTAAATGATTTTCAAGAAGGTAGAGGACCTTCTATTTTTCTCTTGACATCTCAAGTTGGTGGTTTAGGTCTTACACTTACCAGAGCAGATCGTGTAATTGTAGTAGATCCTGCCTGGAATCCAAGTACTGATAACCAAAGTGTTGATCGAGCATACCGAATTGGACAAAAGAAAGATGTTATAGTGTACAGATTAATGACTTGTGGGACTGTTGAAGAAAAGATCTACAGGAAACAGATTTATAAAGGGGGACTGTTTAAAACCGCAACAGAGCACAAAGAACAGATACGGTACTTTAGTCAACAGGATCTTCGGGAGCTTTTTAGCCTTCCAAAAGACGGGTTCGATATATCTGTTACACAGCAACAATTGCATGAGGAACATGATCGACAAATTACAATGGACGATTCTTTGAAATGTCACATAAAGTTCCTGGAAACACAAGGTATTGCAGGAGTTAGTCACCACAATTTGCTCTTCTCTAAGACAGCTCCAGAACCTGTGCACGTATTGGAGGAAGAAGAGGCATCGTTCAGGAGGAATAAGGAGTTTGCTTTTGGTGAAAGAGCAACATCAAGTTCTTCACCCGATCCTGATACAGATGGGGCAAGGTTTGCTTTTAACCCAAAGGATGTGAAGTTGAATAGATTTGCTACAAATGCAAGCAGCAGTCCAAGCAAGCCAACTGAAAGGGAAATCAAAGAGAGAATCAATCGGCTGTCCCAAACTCTAGAAAATAAGGTACTTATCTCAAGATTACCAGACAGGGGGGAAAGAATTCAGAAGCAAATTGTTGAACTGAATTTACAGCTTTCTGAATTGAAGAGAAAAGAACATGAATGTGAAGTCATCGACATCACCGACGAGTTTCAGAAGGTGCTGAATAACCAAATGGCCACTGCGAACCGAGAGAATTGGAACGCAACAGTCACCGGCAGTCATCAAAAAATGGCGAACTCCATTGAAGCTAAGCTCGAACTTTTCCTCCAATGGTTACAGGTTAATGGAGCAGAACTTCGAGCTTGCACGATCAAATATAGCGATTTAAGCAAAGGATGTGGACTTTTTTCTGCTAACGATGCCTCTGACGGGGTTCTATTAGTTGTTCCCCTAAATTTGGCTATTACTCCAATGAGAGTTTTGCAAGATCCTCTGTATGGACCAGAGTGTAGAGCAATGTATGAAGAAGGTGAAGTAGATGATAGATTTTTGATGAATTTATTTCTCATGGTTGAGCGGCTGCGTGAAAATTCTTCATGGAAACCGTACCTTGATGTGCTTCCTGCAAGATTTGGGAATCCACTTTGGTTTACTGATAACGAGCTTTTGGAACTGAAGGGTACCACACTTCATCGAGCAACTGACCTGCAGAAAAATTCATTGCAGTCATTGTATGAAAAAAAAGTGAAGAAATTGGTTAATAGATTGTTGACTCATGATGGGTCTTCAGTAAGGGAGTTGAGCTTTGAAGATTTCCTATGGGCAAATTCCATTTTTTGGGCACGTGCCTTGAACATTCCAATGCCACATGCTTATGTGTTTCCTAAAATTGAAGAAGAGATTGGAAGTGTCTCCTTGACCGAAGAAAATACTGAGGTTTCAACTTCTACTGTCTCTGAGGTGCAGTTGGCTTGCCCGAAAAATGAAAATGGATGTGAAGATCATCAGATAATTGACAGCACAGCTAGTGAGAAAACATTTGGGTCTTTAAAACAAGAAACTGTTTGGGTGGAGGGTCTTGTTCCTGGCATTGACTTTTGCAATCATGATCTGAAAGCAACAGCAACATGGGAAGTTGATGGACCAGGATCAATTACTGGAGTGCCTTTTTCAATGTACCTCCTCTCTGCTGGTGCAAGGTCTTCTGGAATTGAGGAGGTTTCAATCAGTTACGGTAACAAGGGGAACGAGGAGCTTCTTTATCTTTATGGATTTGTCATTGAAAATAATCCAGATGATTATCTCATGGTACACTATCCTTTAGAAGCAATCCAGAATGTTCCCTTTTCTGATTCGAAGATGCAGCTCCTTGAAGTACAGAAGGCTGAAATGCGATGCCTTTTACCAAGAAGATTGCTGGATCATGGATTTCACCCACCAAAAACCTCAAATATCCAAGGAAGTGATGTCTGTAGCAACAGAGCCTGCAATTACAGCTGGAGCGGTCAGCGCAAGATACCTGCTTACTTGGACAAGCTGGTTTTCCCTGAGAAATTTTTAACTGCCTTAAGAACTATATCTATGCAGGAGGATGAGCTTATGCAGGTTGTTGGACCTGAAGGGGATAAGCAGCCCACTGAAACTGATGTCGAAGCAGCAGTCTGGGAGGCTTGTGGTGACTCTGGAGCCTTGCAATTACTTGTTGATCTTCTTCAAAAGAAGATGATGGATCTTGAAGAGGGCACCGGAACTCTGGAAAGCGACACTATGATGCTAAAAGAGGTCCAAGTGATTGAAAGTATGAACGTAAATGGCTCATATCCGGAATCTGCAAGCAGAAGGTCAGATGATGACAGGAAGGAACGAAAATTGGTGAGCAGGAACCAGTGGTGTAGCATTGTTTATCGCCAGGGACAGAAGCAGCTAACCACTCTATTTCTGAAGGAGGCAGAACACGCTTTGCAATTGTCTTTAAGCCACGAAAACTGA 5175 42.03 EAGKVSKSIACSIQTQDQQNQTPFPKPSVGFVPPASRISPAEETLIQFNSGMADSTASRKKPLSLNDRHYRLLQDLSAPPKPSLATARDQRAGDEDEKPSRIELENQRRLSEVSTNVDELHDNSIPQSSGVNVDEQPRKVKIGGRRRLCKLSSRDDGYVDNPVGFDSNEPNFSGITDFDSPSPPPPPHLDHRDNKESDIRDILNDLSTKLELLSVEKKREKPRKFDSLENLSASYCGKGIEEASEADEREVDSLKFSTNPSNSLLGENAKVENVVKTLNDGLSGEYGVEIPPNKVKVDVFYKGTHEVDTCTGSEQLLNLEYGNNKHHEGRDKYTHQDVQRSYNSLGKTPASIDEGEVDLEDDCVVLNRETRNFNEVRRRHDKYEKKSEDSDGIDMFDKSAEDFILEGKSSTGHKSAFKLQGRIAKMLYPHQREGLRWLWSLHCRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELAVVGLSEKTREYYGTSAKLRQYELNYILQDKGVLLTTYDIVRNNSKSLQGNSFFDDEETEDGTTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDKKWFKEYYECAILRGNDKKASERDKRVGSMAAKELRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDIIVWLKLTSCQRKLYEAFLKSELVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMETVLSPEDAGVAEKLAMHLANVADRDDYEVYNDNVSCKISFIMSLLDNLIPKGHNVLIFSQTRKMLNLIEESLLSNDYEFLRIDGTTKATDRVKIVNDFQEGRGPSIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQIYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKDGFDISVTQQQLHEEHDRQITMDDSLKCHIKFLETQGIAGVSHHNLLFSKTAPEPVHVLEEEEASFRRNKEFAFGERATSSSSPDPDTDGARFAFNPKDVKLNRFATNASSSPSKPTEREIKERINRLSQTLENKVLISRLPDRGERIQKQIVELNLQLSELKRKEHECEVIDITDEFQKVLNNQMATANRENWNATVTGSHQKMANSIEAKLELFLQWLQVNGAELRACTIKYSDLSKGCGLFSANDASDGVLLVVPLNLAITPMRVLQDPLYGPECRAMYEEGEVDDRFLMNLFLMVERLRENSSWKPYLDVLPARFGNPLWFTDNELLELKGTTLHRATDLQKNSLQSLYEKKVKKLVNRLLTHDGSSVRELSFEDFLWANSIFWARALNIPMPHAYVFPKIEEEIGSVSLTEENTEVSTSTVSEVQLACPKNENGCEDHQIIDSTASEKTFGSLKQETVWVEGLVPGIDFCNHDLKATATWEVDGPGSITGVPFSMYLLSAGARSSGIEEVSISYGNKGNEELLYLYGFVIENNPDDYLMVHYPLEAIQNVPFSDSKMQLLEVQKAEMRCLLPRRLLDHGFHPPKTSNIQGSDVCSNRACNYSWSGQRKIPAYLDKLVFPEKFLTALRTISMQEDELMQVVGPEGDKQPTETDVEAAVWEACGDSGALQLLVDLLQKKMMDLEEGTGTLESDTMMLKEVQVIESMNVNGSYPESASRRSDDDRKERKLVSRNQWCSIVYRQGQKQLTTLFLKEAEHALQLSLSHEN 1724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1856020 1875161 + Cp4.1LG10g03820.1 Cpe10g00321 475858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 88 116 - -
Cpe10g00321 1724 Coils Coil 1099 1119 - -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 1 37 - -
Cpe10g00321 1724 CDD SET_LSMT 1194 1488 - -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 1027 1046 - -
Cpe10g00321 1724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 664 IPR027417 -
Cpe10g00321 1724 CDD SF2_C_SNF 782 908 - -
Cpe10g00321 1724 Gene3D - 686 983 IPR027417 -
Cpe10g00321 1724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 972 IPR027417 -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 8 26 - -
Cpe10g00321 1724 Pfam Helicase conserved C-terminal domain 785 897 IPR001650 -
Cpe10g00321 1724 SUPERFAMILY SET domain 1166 1492 IPR046341 -
Cpe10g00321 1724 SMART helicmild6 814 897 IPR001650 -
Cpe10g00321 1724 Pfam SNF2-related domain 430 734 IPR000330 GO:0005524|GO:0140658
Cpe10g00321 1724 Gene3D set domain protein methyltransferase, domain 1 1163 1488 - -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 117 134 - -
Cpe10g00321 1724 PANTHER SNF2/RAD54 FAMILY MEMBER 385 1023 - -
Cpe10g00321 1724 Coils Coil 366 386 - -
Cpe10g00321 1724 SMART ultradead3 422 625 IPR014001 -
Cpe10g00321 1724 Gene3D - 405 685 IPR038718 -
Cpe10g00321 1724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 439 614 IPR014001 -
Cpe10g00321 1724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 788 947 IPR001650 -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 138 154 - -
Cpe10g00321 1724 MobiDBLite consensus disorder prediction 73 194 - -
Cpe10g00321 1724 PANTHER OS04G0692700 PROTEIN 385 1023 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00321 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - csv:101213923 1787.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00719 Cpe-Chr3:4372002 Cpe10g00321 Cpe-Chr10:1856020 1.10E-59 dispersed
Cpe05g00071 Cpe-Chr5:353314 Cpe10g00321 Cpe-Chr10:1856020 1.30E-100 dispersed
Cpe07g00812 Cpe-Chr7:7252531 Cpe10g00321 Cpe-Chr10:1856020 6.59E-54 dispersed
Cpe10g00321 Cpe-Chr10:1856020 Cpe19g01203 Cpe-Chr19:8078742 8.33E-62 dispersed
Cpe10g00321 Cpe-Chr10:1856020 Cpe15g00089 Cpe-Chr15:662153 8.76E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50087 PF00176 SNF2_N 2.20E-46 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00321 Cpe_Chr10 FPKM 2.942797 3.521 4.337077 5.009915 3.793189 3.374269 3.856975 5.23507 5.144355 5.588844