Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00329 ATGGGTGACTTCCATGATGAATTGGATACAAATCAGAGTGTGAAAGTGCAGAAGGCGTTGTTGCAATCTGATGTTCAATCGAAATCAGATAGAAGTCCAGTGACTGTAGCCGATTACGGTTCACAGGCGCTGGTTAGTTTTGTACTGGAAAGGGAACTCCCTTCTGAACCTTTTTCAATGGTAGCTGAGGAGGATTCAGGAGATCTACGAAAAGAGAGTGGCCAGGAAACATTACATCGCATTACCGAACTTGTAAATGAAACACTTTCCAGTGAGGGATCATACAGTGCTTCAACCTTAACGGTAGAAGATGTGCTCAGGGCTATTGATAATGGGAAATCAGAAGGAGGTCCTACTGGTAGACATTGGGTTTTGGATCCCATAGATGGCACCAAGGGATTTCTAAGAGGGGACCAATATGCTACTGCATTGGCATTGCTTGATGATGGAAAAGTAGTTTTGGGTGTCCTAGCCTGTCCAAATCTTCCCTTGGAACCAATTGGTAGCAGTAATCAGCATTCTACACTTGGAGACGTCGGTTGCCTTTTCTTTTCTACAGTTGGTGCAGGAACATATATGCAGTCGCTTGCTGGTTCTACATTAACAAAGGTGAGTGTCAGTACCACTGAAAATTCTGAAGAAGCATCCTTCTTTGAATCATATGAAGCTGCTCACTCTCTGCATGACCTCACTAGCTCCATTGCACAAAAACTTGGTGTTAAAGCACCACCCGTTAGGATCGACAGTCAAGCAAAATATGGCGCCCTTTCCCGAGGAGATGGAGCCATATACCTTCGTTTTCCTCACAAGGGATACCGTGAAAAGATTTGGGACCATGCTGCCGGATGCATTGTTGTTACAGAAGCTGGTGGAGTGGTTACGGATGCAGCTGGGAATGCATTGGATTTCTCAAGAGGAAGATATCTGGATCTGCACGAGGGTATCATTGTTACGAACCAGAGACTGATGCCATCACTCCTCAAGGCAGTTCAAGAAGCTCTTCAACAGAGAACTTCTTCAACCTTGTGA 1029 45.0 MGDFHDELDTNQSVKVQKALLQSDVQSKSDRSPVTVADYGSQALVSFVLERELPSEPFSMVAEEDSGDLRKESGQETLHRITELVNETLSSEGSYSASTLTVEDVLRAIDNGKSEGGPTGRHWVLDPIDGTKGFLRGDQYATALALLDDGKVVLGVLACPNLPLEPIGSSNQHSTLGDVGCLFFSTVGAGTYMQSLAGSTLTKVSVSTTENSEEASFFESYEAAHSLHDLTSSIAQKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGVVTDAAGNALDFSRGRYLDLHEGIIVTNQRLMPSLLKAVQEALQQRTSSTL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1930773 1934303 - Cp4.1LG10g03580.1 Cpe10g00329 475866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00329 342 PANTHER PHOSPHATASE 14 338 - -
Cpe10g00329 342 Pfam Inositol monophosphatase family 30 334 IPR000760 GO:0046855
Cpe10g00329 342 ProSitePatterns Inositol monophosphatase family signature 2. 277 291 IPR020550 GO:0046854
Cpe10g00329 342 CDD PAP_phosphatase 14 332 - -
Cpe10g00329 342 PRINTS Inositol monophosphatase superfamily signature 274 298 IPR000760 GO:0046855
Cpe10g00329 342 PRINTS Inositol monophosphatase superfamily signature 32 52 IPR000760 GO:0046855
Cpe10g00329 342 SUPERFAMILY Carbohydrate phosphatase 22 335 - -
Cpe10g00329 342 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 13 337 IPR006239 GO:0006790|GO:0008441
Cpe10g00329 342 PANTHER BNAA09G06680D PROTEIN 14 338 - -
Cpe10g00329 342 ProSitePatterns Inositol monophosphatase family signature 1. 123 136 IPR020583 -
Cpe10g00329 342 Gene3D - 10 204 - -
Cpe10g00329 342 Gene3D - 205 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00329 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - csv:101204881 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00712 Cpe-Chr6:4423492 Cpe10g00329 Cpe-Chr10:1930773 1.17E-83 dispersed
Cpe09g00867 Cpe-Chr9:7940230 Cpe10g00329 Cpe-Chr10:1930773 4.65E-52 dispersed
Cpe10g00329 Cpe-Chr10:1930773 Cpe20g00412 Cpe-Chr20:2352981 3.86E-82 dispersed
Cpe10g00329 Cpe-Chr10:1930773 Cpe02g00719 Cpe-Chr2:4558719 1.15E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00329 Cpe_Chr10 FPKM 0.822753 0.937769 0.577471 0.677131 2.807209 3.151736 3.412483 0.978545 1.203465 0.911002