Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00342 ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCAAAGCCAGTGCTCACCCTAGATTTCCATCCACTTTCAGGTCTCCTCGCAACCGGCGGAGCCGATTTCGATATCAAGATTTGGTTATTGAATTCAGGGGATGGACAAAAAAATGTCCCTGGTGCTACGTATCAAAATAGCCTTTCTTACCATGGTTCTGCTGTTAATAGCCTGCGTTTCTCACCTTCAGGAGAACTGCTTGCCTCTGGTGCTGATGGAGGTGAACTGATCATATGGAAATTGCACCATTTGGAAAGTGGCCAAACTTGGAAGGTCCTGAAGACATTATCATTTCACCGCAAAGATGTGCTGGACCTACAGTGGTCTAGTGATGGTGCATATTTGATGTCTGGATCCGTAGATAATTCCTGCATCATATGGGATGTAAGCAAAGGATCCGTCCATCAGATTTTAGATGCCCATTTGCACTATGTTCAAGGTGTGGCATTGGACCCACTAGGAAAGTATGCTGCTTCTCTGAGTTCAGATAGAAGTTGCAGAATCTATGCCTATAAACCCCCAACCAAAGTAAAAAGCAGTGAGAAAATGAATTATGTTTGTCAGCATGTCGTTACTAAGGCAGAAAATATTTCAGTTGATGATTCTAAGGTAGAAGATGTCAAGAGTATTGTAGTTCAAGCATTTAGTATGTTGATGTTTCCTCTATTGATTGTCATTTATGCTCCAACACTGCAGTCTGTCAAAAACCACCTCTTTCATGATGAGACATTGCCATCTTTCTTCCGAAGGTTGGCCTGGTCACCTGATGGATCTTTTCTACTTGTGCCTGCAGGTGTTTGTAAAATATCGCCGGCATCTGAACCAGTAAATACAGCGCCTGCTATTCAACTCCCTGGTGCCAGCAAGCCGGTTGTAGCAGTTTGCTTTTGTCCAAAGCTTTTTAGTCTTAGAGGATTAAATTCAGCTGGGTTATTTAAGCTTCCACATCGGATCATCTTTGCAGTAGCAACCTTAAATTCTTTGTACATATATGACACTGAAAGTGTTGTGCCGCTAGTAATCATGGCTGGTCTTCACTATGCTGCCATAACAGATGTCGCGTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAACGATGAACTGGGGTCACCACTTGCTCTATCAGAAGATAAAATAGGCACGACAACCAATCAGAATACGAGTTTAACAGGCGTGGTGACTGTAAACGACGATCAAAATAGGAAAACAGAAGTAGAAGAGAGACATGAAGAAAACAAAAGCGTTGAAAAACCAGAAAACATGGTGATCGAAAAACCAGAAAACATGGTGATCGAAAAACCAGAAAACATGGTGATTGAAAAACCTTCGAGTGGAAAAAATCTTGCAGAATCAGAGGGCAGAGGACATGAAATGGAAAAGAAGGAAAGTAAACAGGTATCTATAAGCTCTTCAAGCAACTCTGTTACCAGCAAGCCAGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1551 42.49 MKGGTLQINWHDSKPVLTLDFHPLSGLLATGGADFDIKIWLLNSGDGQKNVPGATYQNSLSYHGSAVNSLRFSPSGELLASGADGGELIIWKLHHLESGQTWKVLKTLSFHRKDVLDLQWSSDGAYLMSGSVDNSCIIWDVSKGSVHQILDAHLHYVQGVALDPLGKYAASLSSDRSCRIYAYKPPTKVKSSEKMNYVCQHVVTKAENISVDDSKVEDVKSIVVQAFSMLMFPLLIVIYAPTLQSVKNHLFHDETLPSFFRRLAWSPDGSFLLVPAGVCKISPASEPVNTAPAIQLPGASKPVVAVCFCPKLFSLRGLNSAGLFKLPHRIIFAVATLNSLYIYDTESVVPLVIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGSPLALSEDKIGTTTNQNTSLTGVVTVNDDQNRKTEVEERHEENKSVEKPENMVIEKPENMVIEKPENMVIEKPSSGKNLAESEGRGHEMEKKESKQVSISSSSNSVTSKPAKRRITPMAIDP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1993033 1997462 - Cp4.1LG10g03450.1 Cpe10g00342 475879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00342 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 289 344 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 347 387 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 143 182 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 53 92 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 101 140 IPR001680 GO:0005515
Cpe10g00342 516 SMART WD40_4 3 41 IPR001680 GO:0005515
Cpe10g00342 516 MobiDBLite consensus disorder prediction 475 489 - -
Cpe10g00342 516 Gene3D - 4 225 IPR015943 GO:0005515
Cpe10g00342 516 MobiDBLite consensus disorder prediction 458 516 - -
Cpe10g00342 516 MobiDBLite consensus disorder prediction 421 442 - -
Cpe10g00342 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Cpe10g00342 516 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 502 IPR045145 GO:0006335
Cpe10g00342 516 MobiDBLite consensus disorder prediction 424 442 - -
Cpe10g00342 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Cpe10g00342 516 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 502 - -
Cpe10g00342 516 Gene3D - 243 434 IPR015943 GO:0005515
Cpe10g00342 516 SUPERFAMILY WD40 repeat-like 8 385 IPR036322 GO:0005515
Cpe10g00342 516 MobiDBLite consensus disorder prediction 490 505 - -
Cpe10g00342 516 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Cpe10g00342 516 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Cpe10g00342 516 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Cpe10g00342 516 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Cpe10g00342 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Cpe10g00342 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00342 K10751 CHAF1B; chromatin assembly factor 1 subunit B - csv:101222502 791.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00416 Cpe-Chr5:2337463 Cpe10g00342 Cpe-Chr10:1993033 6.20E-09 dispersed
Cpe10g00342 Cpe-Chr10:1993033 Cpe16g00802 Cpe-Chr16:7828600 1.37E-11 dispersed
Cpe10g00342 Cpe-Chr10:1993033 Cpe19g00533 Cpe-Chr19:4523197 1.26E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00342 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0