Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00343 ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCTTGACCCTGATCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCATCAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATGATAACGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCTGCGATGCAACCGGTGGATATCGATCCTTCGACTATCCGAAAGCCCAAACGACGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGTTAGATGAAGCAATTCGCTATGTCAAGTTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGAACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATATGGCTGATGGTTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA 693 51.8 MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDLDPDPDPDPDPDSIWSSLLPFHLPDPHHQFPSSSTHLLISYATPSSRVDDNEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPRTDGGAAAGGWPLTFHMADGSASSSTSMETTPAIITPSGW 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1998127 1999138 - Cp4.1LG10g03410.1 Cpe10g00343 475880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00343 230 CDD bHLH_AtIND_like 126 186 - -
Cpe10g00343 230 Pfam Helix-loop-helix DNA-binding domain 134 174 IPR011598 GO:0046983
Cpe10g00343 230 SMART finulus 131 180 IPR011598 GO:0046983
Cpe10g00343 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Cpe10g00343 230 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 222 IPR045843 GO:0003700|GO:0006355
Cpe10g00343 230 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 222 - -
Cpe10g00343 230 MobiDBLite consensus disorder prediction 182 230 - -
Cpe10g00343 230 MobiDBLite consensus disorder prediction 208 230 - -
Cpe10g00343 230 Gene3D - 128 193 IPR036638 GO:0046983
Cpe10g00343 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 187 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00343 Cpe19g00534 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00712 Cpe-Chr9:6368920 Cpe10g00343 Cpe-Chr10:1998127 1.38E-13 dispersed
Cpe10g00343 Cpe-Chr10:1998127 Cpe11g00147 Cpe-Chr11:809628 2.52E-37 dispersed
Cpe20g00581 Cpe-Chr20:3528343 Cpe10g00343 Cpe-Chr10:1998127 1.68E-13 dispersed
Cpe10g00343 Cpe-Chr10:1998127 Cpe19g00534 Cpe-Chr19:4530320 4.89E-93 wgd
Cpe10g00343 Cpe-Chr10:1998127 Cpe05g01108 Cpe-Chr5:7447488 5.57E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50089 PF00010 HLH 1.40E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00343 - - bhj:120073523 306.605