Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00346 ATGAAATCTCCGGTCAGTTTGTGCACCGGAGTGACGTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCCACCATGCAGGTTCTTCAAACCAAGGAGTTCGTCCCTAACCATAATCTCCACCGCCTCATTCAGATTTGGTCTGATTCCCTTCGCCAACGACTCCACTCGCCTGATTCCTCCCCTGTTTCTGACTCGGCTCTCTCCTCAGATCATGTTCTCCGCCTTCTCAAGCGCATGGAGGACGATAAATTACGCGCTGATTCGTTGTCGCGGCTTGTTTCTTTTGCAGCGCAATCGGTGGAGAATCGGAGGCTTCTTTGCGGAATTGACGGCCTCGTGCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATGTTTTGATTGCGCAGACAGTACGGCTGTTGCATTTGATTCGGAATGAGATTGAGGATAAGGAGCGGTTTGCGAAGACGATGTTGAAAAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGAGGAAAGAAACCGTCGAATTGAAAATCTGTTCAGTTAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTGCAATCGCGGAAACAGATGGATTGATGCAAGATTTGCTGAAATTAATGAACTCTGAGAACGATTCAGCCCTAATCGAATCGGTTCTATCGTGCCTAATTTCAATTTCAATGCCGAAACGGATTAAAATCAAATTAGTCCATCTCGGAGTGATTAAATCGGTAACGAAGCTTCTCTCGGAACCGAACTCGAGTTCGAGCATTTCGATGACGGAGAAGGTTCTGAAAGTACTGGAAACGGCATCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACTCCGCGTGCATAGCGGCAATAGTACAGAAGGTGTTGAAAGTATCGAACACAGCGACGGAGCACTCAGTGACAACGCTGTGGAGCATTTGCTATCTGTTCAGAGACGAGAAGGCAGCGGAAGCGCTGACGAAGGCGAACGGATTGACGAAGATTCTGCTGTTGATGCAGAGCAACTGCTCGGCGCCGGTCCGGCAGATGGCCAGAGATCTGCTGAAGATTTTCCGGATAAATTCCAAATCGTGCCTGTCGAGTTACGACACGAAAACTACGCATATCATGCCCTGTTGA 1173 48.85 MKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLRQRLHSPDSSPVSDSALSSDHVLRLLKRMEDDKLRADSLSRLVSFAAQSVENRRLLCGIDGLVPVLVDLLGNVDGDVLIAQTVRLLHLIRNEIEDKERFAKTMLKSDRNCISSLLLILRKETVELKICSVNLLEHLAIDAEAKIAIAETDGLMQDLLKLMNSENDSALIESVLSCLISISMPKRIKIKLVHLGVIKSVTKLLSEPNSSSSISMTEKVLKVLETASTVREGRTEIGEDSACIAAIVQKVLKVSNTATEHSVTTLWSICYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2037028 2038200 - Cp4.1LG10g03430.1 Cpe10g00346 475883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00346 390 CDD RING-Ubox_PUB 1 34 IPR045210 -
Cpe10g00346 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cpe10g00346 390 SUPERFAMILY RING/U-box 1 56 - -
Cpe10g00346 390 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Cpe10g00346 390 SUPERFAMILY ARM repeat 144 376 IPR016024 -
Cpe10g00346 390 Pfam U-box domain 1 56 IPR003613 GO:0004842|GO:0016567
Cpe10g00346 390 PANTHER WDSAM1 PROTEIN 1 390 IPR045185 GO:0061630
Cpe10g00346 390 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 390 - -
Cpe10g00346 390 Gene3D - 61 376 IPR011989 -
Cpe10g00346 390 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01067 Cpe10g00346 CCT
Cpe10g00346 Cpe19g00539 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01067 Cpe-Chr5:7063600 Cpe10g00346 Cpe-Chr10:2037028 1.23E-127 dispersed
Cpe10g00346 Cpe-Chr10:2037028 Cpe16g00824 Cpe-Chr16:7940610 4.52E-34 dispersed
Cpe10g00346 Cpe-Chr10:2037028 Cpe19g00539 Cpe-Chr19:4573975 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00346 - - cmax:111478747 705.671